Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG410_RS14440 Genome accession   NZ_CP109031
Coordinates   3332506..3334239 (+) Length   577 a.a.
NCBI ID   WP_329299510.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00659 strain NBC 00659     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3327506..3339239
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG410_RS14410 (OG410_14435) - 3328160..3329287 (-) 1128 WP_329299507.1 helix-turn-helix domain-containing protein -
  OG410_RS14430 (OG410_14455) - 3330417..3330722 (+) 306 WP_329299508.1 YtxH domain-containing protein -
  OG410_RS14435 (OG410_14460) - 3330882..3332336 (+) 1455 WP_329299509.1 FGGY family carbohydrate kinase -
  OG410_RS14440 (OG410_14465) rcrP 3332506..3334239 (+) 1734 WP_329299510.1 ABC transporter ATP-binding protein Regulator
  OG410_RS14445 (OG410_14470) rcrQ 3334239..3336167 (+) 1929 WP_329299511.1 ABC transporter ATP-binding protein Regulator
  OG410_RS14450 (OG410_14475) - 3336288..3337598 (-) 1311 WP_329299512.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62787.02 Da        Isoelectric Point: 5.8889

>NTDB_id=669623 OG410_RS14440 WP_329299510.1 3332506..3334239(+) (rcrP) [Streptomyces sp. NBC_00659 strain NBC 00659]
MLIRLLRTHLSPYKKPIALLVLLQFLQTCATLYLPTLNAHIIDNGVVKGDTGYILTFGALMIGISLAQVVCNIGAVYYGA
RTASAVGRDIRGAVFDRVQSFSAREVGHFGAPSLITRTTNDVQQVQMLALMTFTLLVSAPIMCVGGIILALGLDVPLSAV
LVAVVPTLGICVTLIVRRLRPLFRTMQVRLDTVNRVLREQITGNRVIRAFVRDGYEKDRFKGANTDLTETSLATGRMLAL
MFPIVMTVVNLSSIAVVWFGAHRIDSGEMQIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLDTESSVVP
PVAPVLELRRHGHLEIREAGFRYPGAEEPVLRSVDLVARPGEVTAVIGSTGSGKSTLLGMIPRLFDATDGQVLVDGVDVA
TIEPKLLARTVGLVPQKPYLFAGTVATNLRYGNPEATDEELWHALEVAQAKGFVEQLENGLDSPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALTEETAEATVVIVAQRVSTIREADRIVVLDEGRVVGTGRHHELMADN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=669623 OG410_RS14440 WP_329299510.1 3332506..3334239(+) (rcrP) [Streptomyces sp. NBC_00659 strain NBC 00659]
GTGCTCATACGACTCCTGCGGACCCACCTCAGTCCGTACAAGAAACCCATCGCCCTGCTGGTGCTGCTGCAGTTCCTGCA
GACCTGCGCCACGCTCTACCTGCCCACCCTCAACGCGCACATCATCGACAACGGTGTCGTGAAGGGTGACACGGGTTACA
TCCTGACCTTCGGCGCCCTGATGATCGGCATCTCGCTGGCCCAGGTCGTCTGCAACATCGGGGCCGTCTACTACGGAGCC
CGTACGGCGTCCGCGGTGGGCCGGGACATCCGGGGCGCCGTCTTCGACCGCGTGCAGTCGTTCTCGGCGCGTGAGGTGGG
CCACTTCGGCGCGCCGTCGCTGATCACGCGCACCACCAATGACGTCCAGCAGGTGCAGATGCTCGCGCTGATGACGTTCA
CCCTGCTGGTGTCGGCGCCGATCATGTGTGTGGGCGGCATCATCCTCGCCCTCGGCCTGGACGTGCCGCTGTCCGCGGTG
CTCGTCGCCGTGGTGCCGACGCTCGGCATCTGCGTGACGCTCATCGTGCGCCGGCTGCGCCCGCTGTTCCGGACCATGCA
GGTGCGCCTGGACACCGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGCGTGATCCGCGCGTTCGTGCGCGACG
GCTACGAGAAGGACCGCTTCAAGGGCGCCAACACCGACCTCACGGAGACGTCGCTGGCCACCGGCCGGATGCTGGCCCTG
ATGTTCCCGATCGTCATGACGGTGGTGAACCTGTCGTCCATCGCGGTCGTCTGGTTCGGCGCCCACCGCATCGACAGCGG
CGAGATGCAGATCGGCGATCTGACCGCGTTCCTGGCCTACCTGATGCAGATCGTGATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTCTGCGCCGAGCGCATCCAGGAGGTCCTGGACACCGAGAGCAGCGTGGTCCCG
CCGGTCGCGCCCGTCCTGGAGCTGCGCCGGCACGGCCACCTGGAGATCCGCGAGGCCGGGTTCCGCTACCCCGGCGCCGA
GGAGCCGGTCCTGAGGTCCGTCGACCTGGTCGCGCGGCCCGGTGAGGTCACCGCGGTCATCGGTTCGACGGGCAGCGGCA
AGTCGACGCTGCTCGGCATGATCCCCCGCCTGTTCGACGCCACCGACGGCCAGGTGCTCGTCGACGGCGTGGACGTCGCG
ACGATCGAGCCGAAGCTGCTGGCCAGGACGGTCGGACTGGTCCCGCAGAAGCCCTATCTGTTCGCGGGGACGGTCGCCAC
GAACCTGCGGTACGGCAACCCGGAGGCGACCGACGAGGAGCTGTGGCACGCGCTGGAGGTGGCGCAGGCCAAGGGCTTCG
TGGAACAGCTCGAGAACGGGCTGGACTCGCCGATCGCGCAGGGCGGCACGAACGTGTCCGGCGGCCAGCGCCAGCGCCTG
GCGATCGCCCGCACGCTCGTGCAGCGCCCCGAGATCTACCTGTTCGACGACTCCTTCTCGGCCCTCGACTACGCGACCGA
CGCGGCGCTGCGCGCGGCGCTCACCGAGGAGACCGCCGAGGCGACCGTGGTGATCGTGGCCCAGCGGGTGTCGACCATCA
GGGAGGCCGACCGGATCGTGGTCCTCGACGAGGGCCGGGTCGTCGGCACCGGACGCCACCACGAACTGATGGCGGACAAC
GAGACCTATCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(352-498)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.175

100

0.395

Multiple sequence alignment