Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   MRZ06_RS07045 Genome accession   NZ_CP094348
Coordinates   1339047..1341437 (-) Length   796 a.a.
NCBI ID   WP_243365180.1    Uniprot ID   -
Organism   Macrococcus armenti strain CCM 2609     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1334047..1346437
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MRZ06_RS07025 (MRZ06_07020) - 1335112..1335423 (-) 312 WP_224182870.1 DUF1292 domain-containing protein -
  MRZ06_RS07030 (MRZ06_07025) ruvX 1335439..1335858 (-) 420 WP_243365178.1 Holliday junction resolvase RuvX -
  MRZ06_RS07035 (MRZ06_07030) - 1335851..1336096 (-) 246 WP_243367333.1 IreB family regulatory phosphoprotein -
  MRZ06_RS07040 (MRZ06_07035) alaS 1336176..1338800 (-) 2625 WP_243365179.1 alanine--tRNA ligase -
  MRZ06_RS07045 (MRZ06_07040) recD2 1339047..1341437 (-) 2391 WP_243365180.1 ATP-dependent RecD-like DNA helicase Machinery gene
  MRZ06_RS07050 (MRZ06_07045) - 1341440..1342099 (-) 660 WP_243365181.1 tetratricopeptide repeat protein -
  MRZ06_RS07055 (MRZ06_07050) mnmA 1342199..1343313 (-) 1115 Protein_1401 tRNA 2-thiouridine(34) synthase MnmA -
  MRZ06_RS07060 (MRZ06_07055) - 1343325..1344452 (-) 1128 WP_243365182.1 cysteine desulfurase family protein -
  MRZ06_RS07065 (MRZ06_07060) - 1344623..1345618 (+) 996 WP_243365183.1 LLM class flavin-dependent oxidoreductase -
  MRZ06_RS07070 (MRZ06_07065) - 1345786..1346208 (-) 423 WP_224185014.1 Rrf2 family transcriptional regulator -

Sequence

Protein


Download         Length: 796 a.a.        Molecular weight: 90243.74 Da        Isoelectric Point: 4.5979

>NTDB_id=669168 MRZ06_RS07045 WP_243365180.1 1339047..1341437(-) (recD2) [Macrococcus armenti strain CCM 2609]
MENMTLFEQSFVKGTITRILFYNNDNFYTVLKAEVIESNEDFDDDATITGYLPQIAEGDTYTFTGKVVTHPKYGKQLQAD
KFEKDMPQSRDGIIHYLSSDLFKGIGKKTARTIVEVLGEDALNIILDDKKSLDQIPKLSDEKKDLIYNTIYDNQAIEKIM
IQLNEFGFGPQLAMKIYQFYKEDTLTIINESPYQLVMDIDGIGFNKADELAGKLGIDNNHPERLKAALIFTIEQASIQNG
HTYIPDQVLLETSFNLLTKNGSQVDPDKLVIALTELTEEHKLVNHEKNIYIPSLFYSETKAVQILHRLMNYKDQVKQFEQ
SEVLLAIGELESMFEVSYAERQKDALVTAMNSKLMILTGGPGTGKTTVVRGIVNLYAELHGLSLDYDDYDGQDFPIVVAA
PTGRASKRLQESTGLEATTIHRLIGWTRENKPDDVLETEITAKLVIIDEMSMVDTWLMFQLMKAVPSDAQIIFVGDQDQL
PSVGPGQVFKDMIDAQIMPQIELNEVYRQQEGSSIVELAHQIKRNEPFDITKRYNDRSFIPCSSNQIPEVIEKIVRSAVK
KGYDMRDIQVLAPIYRGPAGIRALNKVLQEILNPNDEKKRELQFGDIYFRTGDKVLQLVNRPEDNVFNGDIGEVTGIFMA
AENALNKDVVIVDFDGSEVTYTKADLMEVTHAYCCSIHKSQGSEFPIVIMPVVNQYFRMLQKNILYTGLTRAKQSLIFCG
DVHAFNEGIKRIGNARFTSFYQFLIDYFKTEDDDNTHDKRSGNALPFNVGEMTETNMHLVDPMINMGEISPYDFMS

Nucleotide


Download         Length: 2391 bp        

>NTDB_id=669168 MRZ06_RS07045 WP_243365180.1 1339047..1341437(-) (recD2) [Macrococcus armenti strain CCM 2609]
TTGGAAAATATGACTTTGTTTGAGCAATCCTTTGTTAAAGGGACAATAACGAGAATATTATTTTATAACAATGATAATTT
CTATACTGTGCTAAAAGCAGAAGTGATTGAATCAAACGAAGATTTCGATGATGATGCTACGATTACAGGTTATCTCCCAC
AAATTGCTGAAGGTGATACATATACGTTTACAGGTAAAGTTGTAACGCATCCGAAGTACGGAAAGCAGTTACAGGCAGAT
AAGTTTGAGAAGGATATGCCTCAGTCGCGTGACGGTATTATCCATTATTTATCGAGTGATTTGTTTAAAGGTATCGGTAA
GAAAACGGCAAGAACGATTGTTGAAGTGCTCGGAGAAGATGCATTAAACATAATACTTGATGATAAAAAGAGTCTTGACC
AAATCCCGAAGTTATCTGATGAGAAAAAAGACTTAATATATAATACGATTTATGACAATCAGGCAATTGAGAAAATTATG
ATTCAGCTGAATGAATTTGGCTTCGGGCCACAGCTTGCGATGAAGATTTATCAGTTTTATAAGGAAGATACATTAACAAT
CATTAATGAATCCCCGTATCAGCTCGTCATGGATATTGACGGAATCGGCTTTAATAAGGCAGATGAACTAGCAGGTAAGC
TAGGTATTGATAACAATCATCCCGAACGTCTGAAAGCAGCACTGATTTTTACGATTGAACAAGCTTCAATTCAAAATGGA
CATACTTATATTCCAGATCAAGTATTACTTGAAACGAGCTTTAATTTACTGACGAAAAACGGTAGTCAAGTTGATCCCGA
CAAACTCGTAATTGCACTTACTGAGCTGACTGAAGAACACAAACTTGTTAATCATGAAAAGAACATATATATTCCGAGCC
TCTTTTACTCTGAAACGAAAGCTGTCCAGATATTGCATCGATTAATGAATTATAAAGATCAAGTTAAGCAGTTTGAACAG
TCTGAAGTGCTGCTTGCAATCGGGGAACTGGAATCAATGTTTGAAGTAAGTTATGCAGAACGTCAGAAAGATGCGCTCGT
TACTGCGATGAATTCAAAACTGATGATCTTAACAGGAGGACCTGGTACAGGGAAAACGACTGTCGTGCGTGGCATCGTTA
ATTTATATGCTGAGCTTCATGGCTTAAGCCTCGATTATGATGATTATGATGGACAGGACTTCCCAATTGTAGTTGCAGCA
CCTACAGGTCGCGCGTCAAAGCGTCTTCAGGAATCAACAGGACTTGAAGCGACGACAATACACAGATTAATTGGCTGGAC
GAGAGAGAATAAACCTGATGATGTTCTAGAAACTGAGATAACAGCGAAGCTCGTCATTATTGATGAAATGTCGATGGTCG
ATACGTGGCTTATGTTTCAGCTCATGAAAGCTGTGCCAAGCGATGCACAAATTATATTTGTCGGTGACCAGGACCAGTTA
CCTTCAGTCGGACCAGGACAAGTATTTAAAGATATGATTGATGCACAAATTATGCCGCAAATTGAGCTGAATGAAGTGTA
CCGACAGCAGGAAGGCTCATCTATCGTTGAGCTTGCGCATCAAATTAAACGTAATGAGCCGTTTGATATTACGAAGCGTT
ATAATGATAGAAGTTTTATACCGTGCTCAAGCAATCAAATTCCGGAAGTAATAGAGAAAATTGTACGCAGTGCAGTAAAA
AAAGGATATGATATGCGGGATATACAAGTACTCGCGCCGATATACAGAGGGCCAGCCGGTATACGAGCATTGAATAAAGT
GCTGCAGGAAATATTAAATCCAAATGATGAGAAAAAGCGTGAACTGCAGTTTGGCGACATATATTTCAGAACTGGTGATA
AAGTACTGCAACTTGTCAATCGACCAGAGGACAATGTATTTAACGGAGATATCGGTGAAGTGACAGGTATTTTTATGGCA
GCAGAGAATGCGCTCAATAAAGATGTTGTAATTGTTGATTTTGACGGAAGTGAAGTAACATATACGAAAGCAGATTTAAT
GGAAGTTACGCACGCTTACTGCTGTTCTATCCATAAATCTCAAGGATCAGAATTCCCGATTGTAATCATGCCGGTCGTCA
ATCAGTACTTTAGAATGTTACAAAAAAATATACTGTATACTGGTTTAACACGTGCAAAGCAATCGCTTATATTTTGTGGT
GATGTACACGCGTTTAATGAAGGAATTAAACGTATCGGAAACGCTAGATTTACGAGCTTCTATCAGTTTCTGATAGATTA
TTTCAAAACTGAAGATGATGATAATACTCATGATAAACGAAGTGGAAATGCACTGCCGTTTAATGTCGGTGAGATGACAG
AAACCAATATGCACCTTGTTGATCCGATGATTAATATGGGGGAAATTTCACCATATGATTTTATGAGTTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(338-544)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(671-718)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(584-654)

Helix-hairpin-helix containing domain (HHH_RecD2)

(153-243)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

51.368

100

0.519

Multiple sequence alignment