Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   OID55_RS15150 Genome accession   NZ_CP108990
Coordinates   3485804..3488059 (-) Length   751 a.a.
NCBI ID   WP_329187977.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00715     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3480804..3493059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OID55_RS15135 (OID55_15115) - 3481053..3481292 (+) 240 WP_164370583.1 heavy-metal-associated domain-containing protein -
  OID55_RS15140 (OID55_15120) - 3481379..3483628 (+) 2250 WP_267050851.1 cation-translocating P-type ATPase -
  OID55_RS15145 (OID55_15125) - 3484272..3485561 (-) 1290 WP_081217371.1 citrate synthase -
  OID55_RS15150 (OID55_15130) recD/recD2/recDB 3485804..3488059 (-) 2256 WP_329187977.1 ATP-dependent RecD-like DNA helicase Machinery gene
  OID55_RS15155 (OID55_15135) - 3488249..3489307 (+) 1059 WP_385390201.1 LacI family DNA-binding transcriptional regulator -
  OID55_RS15160 (OID55_15140) - 3489319..3490881 (+) 1563 WP_164370715.1 sugar ABC transporter ATP-binding protein -
  OID55_RS15165 (OID55_15145) - 3490871..3492823 (+) 1953 WP_164370586.1 substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 751 a.a.        Molecular weight: 81447.98 Da        Isoelectric Point: 6.9757

>NTDB_id=668749 OID55_RS15150 WP_329187977.1 3485804..3488059(-) (recD/recD2/recDB) [Streptomyces sp. NBC_00715]
MSTQAGADQQGERRTATLEGVLERITYANEESGYTVARVDTGRGAGDLLTVVGALLGAQAGESLRMEGRWGSHPQYGKQF
TVENYTTVLPATIQGIRRYLGSGLVKGIGPVFADRITRHFGLDTLRIIEEEPKRLIEVPGLGPKRTGRIADAWEEQKAIK
EVMLFLQTVEVSTSIAVRIYKKYGDASISVVKNRPYRLASDVWGIGFLTADKIAQSVGIPHDSPERVKAGLQYALSQSTD
QGHCYLPEEQLIADAVKLLQVDTGLVIECLAELAAPAEEGEEPGVVREKVPGPDGGDPVTAVYLVPFHRAELSLAAQVLR
LLRTDRDRMPGFRDVAWDKALAWLKDRTGAELAPEQEAAVRLALTEKVAVLTGGPGCGKSFTVRSIVELARARRAKVVLA
APTGRAAKRLSELTGADASTVHRLLELKPGGDAAYDRDRPLDADLVVVDEASMLDLLLANKLVKAVPPGAHLLFVGDVDQ
LPSVGAGEVLRDLLADRGPVPAVRLTRVFRQAQQSGVVTNAHRINSGQHPLTDGMKDFFLFVEDDTEEAGRLAVDVAARR
IPAKFGLDPRRDIQVLAPMHRGPAGAGHLNGLLQQAITPGRPDLAEKRFGGRVFRVGDKVTQIRNNYEKGENGVFNGTVG
VVTSLDPVEQRLTVRTDEDEEVGYEFDELDELAHAYALTIHRSQGSEYPAVVIPVTTSAWMMLQRNLLYTAVTRAKKLVV
LVGSRKAIGQAVRTVSAGRRCTALDFRLSGV

Nucleotide


Download         Length: 2256 bp        

>NTDB_id=668749 OID55_RS15150 WP_329187977.1 3485804..3488059(-) (recD/recD2/recDB) [Streptomyces sp. NBC_00715]
ATGTCCACTCAGGCGGGGGCCGACCAGCAGGGCGAGCGGCGAACGGCGACGCTGGAAGGCGTGCTGGAGCGCATCACCTA
TGCGAACGAGGAGAGCGGTTACACGGTCGCGCGCGTCGACACCGGCCGGGGCGCGGGCGACCTGCTCACGGTGGTCGGAG
CGCTCCTCGGTGCGCAGGCCGGCGAGTCCCTGCGCATGGAGGGCCGCTGGGGCTCCCACCCGCAGTACGGCAAGCAGTTC
ACGGTGGAGAACTACACGACGGTGCTCCCCGCCACGATCCAGGGCATCCGCCGCTATCTCGGCTCCGGCCTGGTCAAGGG
CATCGGCCCCGTCTTCGCCGACCGGATCACCCGGCACTTCGGGCTGGACACCCTGCGGATCATCGAGGAGGAGCCGAAGC
GGCTCATCGAGGTCCCCGGACTCGGCCCCAAGCGCACGGGCCGGATCGCCGACGCCTGGGAGGAGCAGAAGGCGATCAAG
GAGGTCATGCTCTTCCTCCAGACCGTCGAGGTCTCCACCTCCATCGCCGTGCGCATCTACAAGAAGTACGGCGACGCGTC
GATCTCCGTCGTGAAGAACCGGCCCTACCGCCTGGCGTCGGACGTCTGGGGCATCGGCTTCCTCACCGCCGACAAGATCG
CCCAGTCGGTCGGTATCCCGCACGACAGCCCGGAGCGCGTCAAGGCCGGCCTCCAGTACGCGCTGTCCCAGTCCACCGAC
CAGGGCCACTGCTATCTCCCGGAGGAGCAACTGATCGCGGACGCGGTGAAGTTGCTCCAGGTCGACACCGGCCTGGTCAT
CGAGTGCCTGGCCGAGCTGGCCGCCCCCGCCGAGGAGGGCGAGGAGCCCGGGGTCGTCCGCGAGAAGGTGCCGGGACCGG
ACGGCGGCGACCCGGTGACGGCGGTCTACCTGGTCCCCTTCCACCGCGCCGAACTGTCCCTCGCCGCCCAGGTGTTGCGC
CTGCTGCGCACCGACCGCGACCGGATGCCCGGCTTCCGCGACGTGGCCTGGGACAAGGCCCTCGCGTGGCTGAAGGACAG
GACGGGCGCGGAGCTGGCCCCCGAGCAGGAGGCGGCCGTCCGGCTCGCGCTCACCGAGAAGGTCGCCGTGCTCACCGGCG
GCCCCGGCTGCGGCAAGTCGTTCACCGTCCGCTCGATCGTCGAGCTGGCCCGCGCCCGGCGCGCCAAGGTGGTCCTTGCC
GCCCCCACCGGCCGGGCCGCCAAGCGGCTCTCCGAGCTGACCGGCGCCGACGCGTCCACCGTGCACCGCCTGTTGGAGCT
CAAGCCGGGCGGCGACGCGGCGTACGACAGGGACCGCCCGCTCGACGCCGACCTGGTCGTCGTCGACGAGGCCTCGATGC
TCGACCTGCTCCTCGCCAACAAGCTGGTCAAGGCGGTGCCCCCGGGCGCGCACCTGCTCTTCGTCGGCGACGTGGACCAG
TTGCCCAGCGTCGGCGCGGGGGAGGTGCTGCGCGACCTGCTCGCCGACCGCGGCCCGGTCCCCGCGGTGCGGCTCACCCG
GGTCTTCCGCCAGGCCCAGCAGTCCGGCGTGGTGACCAACGCGCACCGGATCAACTCCGGGCAGCACCCCCTCACCGACG
GCATGAAGGACTTCTTCCTCTTCGTCGAGGACGACACCGAGGAGGCGGGCCGGCTCGCGGTGGACGTGGCGGCCCGTCGG
ATTCCGGCCAAGTTCGGCCTCGACCCGCGCCGGGACATCCAGGTCCTCGCACCCATGCACCGGGGCCCCGCGGGCGCCGG
CCATCTCAACGGCCTGCTGCAGCAGGCCATCACCCCCGGCCGCCCCGACCTCGCCGAGAAGCGGTTCGGCGGCCGCGTCT
TCCGCGTCGGCGACAAGGTCACCCAGATCCGCAACAACTACGAGAAGGGCGAGAACGGCGTCTTCAACGGCACGGTGGGC
GTCGTCACCTCCCTCGATCCCGTCGAGCAGCGCCTGACGGTGCGCACGGACGAGGACGAGGAGGTGGGGTACGAGTTCGA
CGAACTCGACGAGCTGGCGCACGCCTACGCGCTGACCATCCACCGCTCCCAGGGCAGCGAGTATCCGGCGGTGGTGATCC
CGGTCACCACCAGCGCGTGGATGATGCTCCAGCGCAATCTGCTCTACACGGCGGTGACCCGCGCCAAGAAGCTGGTCGTC
CTCGTCGGTTCGCGCAAGGCGATCGGCCAGGCGGTGCGTACGGTGTCGGCGGGACGCCGGTGCACGGCCCTGGACTTCCG
GCTCTCCGGCGTCTGA

Domains

Predicted by InterProScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(589-655)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(674-722)

AAA domain (AAA_30)

(351-530)

Helix-hairpin-helix containing domain (HHH_RecD2)

(155-245)

Helix-hairpin-helix domain (HHH_5)

(105-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

35.53

100

0.366