Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OID55_RS13880 Genome accession   NZ_CP108990
Coordinates   3175060..3176988 (+) Length   642 a.a.
NCBI ID   WP_406360554.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00715     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3170060..3181988
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OID55_RS13865 (OID55_13840) - 3171284..3171589 (+) 306 WP_164370735.1 YtxH domain-containing protein -
  OID55_RS13870 (OID55_13845) - 3171687..3173141 (+) 1455 WP_164370734.1 FGGY family carbohydrate kinase -
  OID55_RS13875 (OID55_13850) rcrP 3173327..3175060 (+) 1734 WP_164370733.1 ABC transporter ATP-binding protein Regulator
  OID55_RS13880 (OID55_13855) rcrQ 3175060..3176988 (+) 1929 WP_406360554.1 ABC transporter ATP-binding protein Regulator
  OID55_RS13885 (OID55_13860) - 3177086..3178372 (-) 1287 WP_266613529.1 RNA polymerase sigma factor -
  OID55_RS13890 (OID55_13865) dnaG 3178610..3180514 (-) 1905 WP_081217151.1 DNA primase -
  OID55_RS13895 (OID55_13870) - 3180638..3181903 (-) 1266 WP_382748825.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69207.67 Da        Isoelectric Point: 6.3627

>NTDB_id=668745 OID55_RS13880 WP_406360554.1 3175060..3176988(+) (rcrQ) [Streptomyces sp. NBC_00715]
MAGPMGRMMAGSGPGQRSMEFKVSGRRLLTQFKPERATLYVMLVAVVFSVGLSVVGPKILGRATDLVFAGIVGRQMPAGA
TKAESLDSLRAHGQGAVADMLKSTAFTPGEGIDFHAVGNVLLIALCTFLLAGLLMAVATRLVNRSVNRTVFRMREDLQAK
LSRLPLSYFDKRQRGEVLSRATNDMDNIQQTLQQSMGQLVNSLLTIVGVLAMMFWVSPLLALVALVTVPLSFVVATRIGK
RSQPHFVQQWRTTGKLNAHIEEMYTGHNLVKVFGRADESAAQFAEQNEKLYQAGFKAQFNSGIMQPLMMFVSNLNYVLVA
VVGGLRVASGTLSIGDVQAFVQYSRQFSMPLTQVASMANLVQSGVASAERVFEILDADEQPADPAVSAGPAELRGRVALE
HVSFRYDPEKPLIEDLSLTVEPGRTVAIVGPTGAGKTTLVNLLMRFYDVTGGRITLDGVDVASISRDELRAAIGMVLQDT
WLFGGTIADNIAYGAAREVTRGEIEEAARAAHADRFVRTLPDGYDTVIDDEGSGVSAGEKQLITIARAFLSDPVILVLDE
ATSSVDTRTEVLIQKAMAKLAHGRTSFVIAHRLSTIRDADTILVMEDGAIVEQGAHAELLESGGAYARLYQAQFAQAVAE
VD

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=668745 OID55_RS13880 WP_406360554.1 3175060..3176988(+) (rcrQ) [Streptomyces sp. NBC_00715]
ATGGCCGGGCCGATGGGGCGCATGATGGCCGGGAGCGGCCCGGGCCAGCGCTCGATGGAATTCAAGGTGTCGGGCCGCAG
GCTGCTCACCCAGTTCAAGCCCGAGCGCGCCACGCTGTACGTCATGCTGGTCGCCGTGGTCTTCAGCGTCGGCCTGTCGG
TGGTCGGCCCGAAGATCCTCGGCCGGGCCACCGACCTGGTCTTCGCGGGCATCGTCGGCCGGCAGATGCCGGCCGGCGCC
ACCAAGGCCGAGTCCCTGGACTCGCTGCGCGCGCACGGCCAGGGTGCCGTCGCCGACATGCTCAAGAGCACGGCCTTCAC
CCCCGGCGAGGGCATCGACTTCCACGCCGTCGGCAACGTCCTGCTGATCGCGCTCTGTACGTTCCTGCTGGCCGGCCTGC
TGATGGCGGTCGCGACGCGGCTGGTGAACCGGTCCGTCAACAGGACCGTCTTCCGGATGCGCGAGGACCTCCAGGCGAAG
CTGTCGCGGTTGCCGCTGTCGTACTTCGACAAGCGGCAGCGCGGTGAGGTCCTCAGCCGGGCCACGAACGACATGGACAA
CATCCAGCAGACCCTCCAGCAGTCGATGGGCCAGCTCGTCAACTCGCTGCTGACCATCGTGGGCGTGCTCGCGATGATGT
TCTGGGTGTCGCCGCTGCTCGCGCTCGTCGCGCTGGTCACGGTGCCGCTGTCGTTCGTCGTCGCGACCCGGATCGGCAAG
CGCTCGCAGCCGCACTTCGTGCAGCAGTGGCGCACCACCGGCAAGCTCAACGCCCACATCGAGGAGATGTACACCGGCCA
CAACCTGGTGAAGGTGTTCGGGCGGGCCGACGAGTCGGCGGCGCAGTTCGCCGAGCAGAACGAGAAGCTCTACCAGGCCG
GGTTCAAGGCCCAGTTCAACAGCGGGATCATGCAGCCGCTGATGATGTTCGTCTCGAACCTGAACTACGTGCTGGTCGCG
GTGGTCGGCGGACTGCGCGTCGCCTCCGGCACGCTGTCGATCGGTGACGTGCAGGCCTTCGTCCAGTACTCCCGCCAGTT
CTCGATGCCGCTGACGCAGGTCGCGTCGATGGCGAACCTGGTGCAGTCGGGCGTGGCGTCGGCGGAGCGGGTCTTCGAGA
TCCTCGACGCGGACGAGCAGCCGGCGGACCCGGCGGTCTCGGCCGGCCCCGCCGAACTGCGCGGGCGCGTGGCGCTGGAG
CACGTGTCGTTCCGCTACGACCCGGAGAAGCCGCTCATCGAGGACCTCTCGCTGACGGTGGAGCCGGGCCGGACGGTGGC
CATCGTCGGCCCGACCGGGGCCGGCAAGACCACCCTGGTGAACCTGCTGATGCGGTTCTACGACGTCACGGGCGGCCGCA
TCACCCTCGACGGGGTCGACGTGGCGTCCATCTCCCGTGACGAACTGCGGGCCGCCATCGGCATGGTGCTCCAGGACACC
TGGCTGTTCGGGGGCACGATCGCCGACAACATCGCGTACGGCGCCGCGCGGGAGGTCACCCGCGGGGAGATCGAGGAGGC
GGCGCGCGCCGCGCACGCCGACCGGTTCGTCCGTACGCTGCCCGACGGCTACGACACCGTGATCGACGACGAGGGATCGG
GCGTCAGCGCGGGTGAGAAGCAGCTGATCACCATCGCCCGGGCCTTCCTGTCGGACCCGGTCATCCTGGTGCTCGACGAG
GCGACCAGCTCCGTGGACACCCGGACCGAGGTGCTGATCCAGAAGGCGATGGCGAAGCTGGCGCACGGCCGGACGTCGTT
CGTGATCGCCCACCGCCTGTCGACGATCCGGGACGCCGACACGATCCTCGTGATGGAGGACGGCGCGATCGTCGAACAGG
GCGCGCACGCCGAGCTGCTGGAGTCCGGCGGCGCCTACGCCCGCCTCTACCAGGCCCAGTTCGCCCAGGCGGTCGCCGAG
GTCGACTAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(414-563)

ABC transporter transmembrane region (ABC_membrane)

(41-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

39.644

96.262

0.382