Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   MRS49_RS17635 Genome accession   NZ_CP094294
Coordinates   3455308..3456087 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain AP3     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3450308..3461087
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MRS49_RS17615 trmFO 3450995..3452302 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  MRS49_RS17620 xerC 3452372..3453289 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  MRS49_RS17625 hslV 3453305..3453850 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  MRS49_RS17630 hslU 3453867..3455270 (+) 1404 WP_007611413.1 HslU--HslV peptidase ATPase subunit -
  MRS49_RS17635 codY 3455308..3456087 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  MRS49_RS17640 flgB 3456441..3456830 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  MRS49_RS17645 flgC 3456830..3457282 (+) 453 WP_007409776.1 flagellar basal body rod protein FlgC -
  MRS49_RS17650 fliE 3457293..3457613 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  MRS49_RS17655 fliF 3457656..3459266 (+) 1611 WP_032874889.1 flagellar basal-body MS-ring/collar protein FliF -
  MRS49_RS17660 fliG 3459279..3460295 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  MRS49_RS17665 fliH 3460288..3461043 (+) 756 WP_032874891.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=668697 MRS49_RS17635 WP_003154263.1 3455308..3456087(+) (codY) [Bacillus velezensis strain AP3]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=668697 MRS49_RS17635 WP_003154263.1 3455308..3456087(+) (codY) [Bacillus velezensis strain AP3]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTAGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471

Multiple sequence alignment