Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   LUW74_RS30210 Genome accession   NZ_CP094266
Coordinates   6454590..6454748 (-) Length   52 a.a.
NCBI ID   WP_250358259.1    Uniprot ID   -
Organism   Actinomadura madurae strain MRC005     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6449590..6459748
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUW74_RS30190 (LUW74_30195) - 6449954..6450622 (-) 669 WP_250358254.1 ATP-binding protein -
  LUW74_RS30195 (LUW74_30200) - 6450629..6451057 (-) 429 WP_250358255.1 hypothetical protein -
  LUW74_RS30200 (LUW74_30205) - 6452300..6452668 (+) 369 WP_250372141.1 hypothetical protein -
  LUW74_RS30205 (LUW74_30210) - 6452821..6454578 (-) 1758 WP_250372142.1 FAD/NAD(P)-binding protein -
  LUW74_RS30210 (LUW74_30215) rcrP 6454590..6454748 (-) 159 WP_250358259.1 hypothetical protein Regulator
  LUW74_RS30215 (LUW74_30220) - 6454742..6456322 (-) 1581 WP_250372143.1 ABC transporter ATP-binding protein -
  LUW74_RS30220 (LUW74_30225) - 6456591..6458360 (-) 1770 WP_250372144.1 protein kinase/lanthionine synthetase C family protein -
  LUW74_RS30225 (LUW74_30230) - 6458291..6459223 (-) 933 WP_250372145.1 hypothetical protein -

Sequence

Protein


Download         Length: 52 a.a.        Molecular weight: 5689.49 Da        Isoelectric Point: 5.5226

>NTDB_id=668472 LUW74_RS30210 WP_250358259.1 6454590..6454748(-) (rcrP) [Actinomadura madurae strain MRC005]
MLIAAHRLSTVVDADQIVVLDRGRVVAVGRHDELAATSPLYRELASYQLSPD

Nucleotide


Download         Length: 159 bp        

>NTDB_id=668472 LUW74_RS30210 WP_250358259.1 6454590..6454748(-) (rcrP) [Actinomadura madurae strain MRC005]
ATGCTGATCGCCGCGCACCGGCTGTCCACAGTGGTGGACGCCGACCAGATCGTGGTCCTCGACCGCGGCCGGGTCGTGGC
GGTCGGACGCCACGACGAGCTCGCCGCGACCAGCCCGCTGTACCGAGAACTCGCTTCATACCAGCTTTCGCCCGACTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

52.941

98.077

0.519
  rcrQ Streptococcus mutans UA159

37.255

98.077

0.365
  amiF Streptococcus thermophilus LMD-9

35.185

100

0.365
  amiF Streptococcus thermophilus LMG 18311

35.185

100

0.365
  amiF Streptococcus salivarius strain HSISS4

35.185

100

0.365

Multiple sequence alignment