Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG242_RS24875 Genome accession   NZ_CP108981
Coordinates   5475606..5476400 (-) Length   264 a.a.
NCBI ID   WP_026171816.1    Uniprot ID   A0ABY6PP80
Organism   Streptomyces sp. NBC_00727     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5470606..5481400
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG242_RS24860 (OG242_24835) - 5470973..5471563 (+) 591 WP_405900252.1 GNAT family N-acetyltransferase -
  OG242_RS24865 (OG242_24840) - 5471624..5473480 (+) 1857 WP_405900253.1 IucA/IucC family protein -
  OG242_RS24870 (OG242_24845) - 5473531..5475501 (+) 1971 WP_405900254.1 ATP-dependent DNA helicase -
  OG242_RS24875 (OG242_24850) dinR/lexA 5475606..5476400 (-) 795 WP_026171816.1 transcriptional repressor LexA Regulator
  OG242_RS24880 (OG242_24855) nrdR 5476907..5477419 (+) 513 WP_018520799.1 transcriptional regulator NrdR -
  OG242_RS24885 (OG242_24860) - 5477584..5480487 (+) 2904 WP_405900255.1 vitamin B12-dependent ribonucleotide reductase -
  OG242_RS24890 (OG242_24865) - 5480588..5481124 (-) 537 WP_405900256.1 TerD family protein -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 28592.36 Da        Isoelectric Point: 6.9854

>NTDB_id=668463 OG242_RS24875 WP_026171816.1 5475606..5476400(-) (dinR/lexA) [Streptomyces sp. NBC_00727]
MTTTADSAIITAQDRSQSRLEPVHAMNDSVTNTEGPEPGRPARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYP
PSMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSTQPTDTTGKPAASYVPLVGRIAAGGPILAE
ESVEDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHN
AAYQPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=668463 OG242_RS24875 WP_026171816.1 5475606..5476400(-) (dinR/lexA) [Streptomyces sp. NBC_00727]
GTGACCACCACCGCAGACAGTGCCATCATCACTGCCCAGGACCGCTCCCAGAGCCGACTCGAGCCGGTGCATGCCATGAA
TGACTCAGTCACGAACACGGAGGGCCCGGAGCCCGGGCGCCCAGCGCGCTCGCTCCCCGGACGACCTCCCGGGATCCGGG
CCGACAGCTCGGGGCTCACGGACCGGCAGCGACGGGTGATCGAGGTCATCCGGGATTCCGTGCAGCGGCGCGGCTACCCG
CCGTCGATGCGGGAGATCGGTCAGGCCGTGGGACTCTCCAGCACCTCCTCGGTCGCCCATCAGCTGATGGCCCTGGAGCG
CAAGGGCTTCCTCCGCCGGGACCCGCACCGCCCCCGGGCCTACGAGGTGCGCGGCTCCGACCAGCCGAGCACCCAGCCGA
CGGACACCACGGGCAAGCCCGCCGCTTCGTACGTGCCGCTGGTGGGCCGGATCGCCGCAGGCGGGCCGATCCTCGCCGAG
GAGTCCGTGGAGGACGTCTTCCCGCTCCCCCGCCAGCTGGTCGGCGACGGCGAGCTCTTCGTGCTGAAGGTCGTCGGGGA
CTCGATGATCGAGGCGGCGATCTGTGACGGCGACTGGGTCACGGTCCGGCGCCAGCCCGTCGCGGAGAACGGCGACATCG
TGGCCGCCATGCTGGACGGCGAGGCCACCGTGAAGCGCTTCAAGCGCGAGGACGGCCACGTCTGGCTGCTCCCCCACAAC
GCCGCGTACCAGCCGATCCCCGGCGACGAGGCGACGATCCTCGGCAAGGTCGTCGCGGTGCTGCGCCGGGTCTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(146-258)

LexA DNA binding domain (LexA_DNA_bind)

(57-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.226

80.303

0.371

Multiple sequence alignment