Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   LUW76_RS20400 Genome accession   NZ_CP094265
Coordinates   4445329..4445487 (-) Length   52 a.a.
NCBI ID   WP_250358259.1    Uniprot ID   -
Organism   Actinomadura madurae strain MRC008     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4440329..4450487
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUW76_RS20375 (LUW76_20375) - 4440695..4441363 (-) 669 WP_250358254.1 ATP-binding protein -
  LUW76_RS20380 (LUW76_20380) - 4441370..4441798 (-) 429 WP_250358255.1 hypothetical protein -
  LUW76_RS20385 (LUW76_20385) - 4443041..4443535 (+) 495 WP_250358256.1 hypothetical protein -
  LUW76_RS20390 (LUW76_20390) - 4443561..4444097 (-) 537 WP_250358257.1 hypothetical protein -
  LUW76_RS20395 (LUW76_20395) - 4444094..4445317 (-) 1224 WP_250358258.1 FAD/NAD(P)-binding protein -
  LUW76_RS20400 (LUW76_20400) rcrP 4445329..4445487 (-) 159 WP_250358259.1 hypothetical protein Regulator
  LUW76_RS20405 (LUW76_20405) - 4445481..4447070 (-) 1590 WP_250358260.1 ABC transporter ATP-binding protein -
  LUW76_RS20410 (LUW76_20410) - 4447330..4448346 (-) 1017 WP_250358261.1 lanthionine synthetase C family protein -
  LUW76_RS20415 (LUW76_20415) lanKC 4448285..4449964 (-) 1680 WP_250358262.1 class III lanthionine synthetase LanKC -

Sequence

Protein


Download         Length: 52 a.a.        Molecular weight: 5689.49 Da        Isoelectric Point: 5.5226

>NTDB_id=668463 LUW76_RS20400 WP_250358259.1 4445329..4445487(-) (rcrP) [Actinomadura madurae strain MRC008]
MLIAAHRLSTVVDADQIVVLDRGRVVAVGRHDELAATSPLYRELASYQLSPD

Nucleotide


Download         Length: 159 bp        

>NTDB_id=668463 LUW76_RS20400 WP_250358259.1 4445329..4445487(-) (rcrP) [Actinomadura madurae strain MRC008]
ATGCTGATCGCCGCGCACCGGCTGTCCACAGTGGTGGACGCCGACCAGATCGTGGTCCTCGACCGCGGCCGGGTCGTGGC
GGTCGGACGCCACGACGAGCTCGCCGCGACCAGCCCGCTGTACCGAGAACTCGCTTCATACCAGCTTTCGCCCGACTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

52.941

98.077

0.519
  rcrQ Streptococcus mutans UA159

37.255

98.077

0.365
  amiF Streptococcus thermophilus LMD-9

35.185

100

0.365
  amiF Streptococcus thermophilus LMG 18311

35.185

100

0.365
  amiF Streptococcus salivarius strain HSISS4

35.185

100

0.365

Multiple sequence alignment