Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OIB37_RS12765 Genome accession   NZ_CP108882
Coordinates   2788939..2790672 (+) Length   577 a.a.
NCBI ID   WP_330457704.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00820     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2783939..2795672
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIB37_RS12730 (OIB37_12730) - 2784734..2785687 (+) 954 WP_330457700.1 IS481 family transposase -
  OIB37_RS12735 (OIB37_12735) - 2785684..2786280 (-) 597 WP_330457701.1 hypothetical protein -
  OIB37_RS12755 (OIB37_12755) - 2786946..2787248 (+) 303 WP_330457702.1 YtxH domain-containing protein -
  OIB37_RS12760 (OIB37_12760) - 2787345..2788799 (+) 1455 WP_330457703.1 FGGY family carbohydrate kinase -
  OIB37_RS12765 (OIB37_12765) rcrP 2788939..2790672 (+) 1734 WP_330457704.1 ABC transporter ATP-binding protein Regulator
  OIB37_RS12770 (OIB37_12770) rcrQ 2790672..2792600 (+) 1929 WP_330457705.1 ABC transporter ATP-binding protein Regulator
  OIB37_RS12775 (OIB37_12775) - 2792652..2793907 (-) 1256 Protein_2528 RNA polymerase sigma factor -
  OIB37_RS12780 (OIB37_12780) - 2794093..2794728 (+) 636 WP_330457706.1 hypothetical protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62843.13 Da        Isoelectric Point: 5.7626

>NTDB_id=668189 OIB37_RS12765 WP_330457704.1 2788939..2790672(+) (rcrP) [Streptomyces sp. NBC_00820]
MLIRLLRTYLRPYRKTITLLVLLQFLQTCATLYLPNLNARIIDNGVVKGDTGYILSSGALMIGISLIQVVCNIGAVYYGA
RTAAALGRDVRLAVFERVQSFSAREVGHFGAPSLITRTTNDVQQVQMLALMTFTLMVSAPIMCVGGVVLALGLDVPLSGV
LVAVVPVLGICVTLIVRRLRPLFRSMQVRLDTVNRVLREQITGNRVIRAFVRDEYEQERFGKANGDLTEMQLATGRMLAL
MFPMVMTVVNLSSIAVVWFGAHRIDSGGMRIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIEEVLDTESSVVP
PLAPVTELRRHGHLEIREAGFRYPGAEEPVLRSIGLEARPGETTAVIGSTGSGKSTLLGLVPRLFDATEGQVLVDGVDVQ
EVEPALLARTVGLVPQKPYLFAGTVATNLRYGNPDATDEELWHALEVAQAKGFVERLDGGLDAVIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALAEETAEATVVIVAQRVATIRDADRIIVLDEGRVVGSGRHHELMAGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=668189 OIB37_RS12765 WP_330457704.1 2788939..2790672(+) (rcrP) [Streptomyces sp. NBC_00820]
GTGCTCATACGACTTCTGCGGACCTATCTCAGGCCCTACAGGAAAACCATCACTCTGCTGGTGCTGCTGCAGTTCCTGCA
GACCTGCGCCACCCTCTATCTGCCCAACCTCAACGCGCGCATCATCGACAACGGTGTCGTGAAGGGGGACACGGGTTACA
TCCTCTCCTCCGGCGCCCTGATGATCGGCATCTCGCTGATCCAGGTCGTCTGCAACATCGGCGCCGTGTACTACGGCGCC
CGGACCGCCGCCGCGCTCGGCCGGGACGTGCGCCTCGCGGTCTTCGAGCGGGTGCAGTCCTTCTCCGCCCGCGAGGTGGG
CCACTTCGGGGCGCCCTCGCTCATCACCCGTACGACGAACGACGTACAGCAGGTCCAGATGCTGGCCCTGATGACGTTCA
CGCTGATGGTGTCGGCGCCCATCATGTGCGTGGGCGGTGTCGTGCTGGCCCTCGGCCTCGACGTGCCGCTGTCCGGGGTG
CTCGTCGCCGTCGTCCCCGTGCTCGGCATCTGCGTCACGCTGATCGTGCGCCGGCTGCGGCCGCTGTTCCGGTCCATGCA
GGTCCGCCTGGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGGGTGATCCGCGCCTTCGTCCGCGACG
AGTACGAGCAGGAGCGGTTCGGGAAGGCCAACGGCGACCTGACCGAGATGCAGCTGGCTACCGGCCGGATGCTCGCGCTG
ATGTTCCCGATGGTGATGACGGTGGTGAACCTGTCGTCCATCGCGGTGGTGTGGTTCGGCGCGCACCGCATCGACAGCGG
CGGCATGCGGATCGGTGACCTGACCGCGTTCCTCGCCTATCTGATGCAGATCGTGATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTGTGCGCCGAGCGCATCGAGGAGGTGCTGGACACCGAATCGAGCGTGGTTCCG
CCGCTCGCGCCGGTCACCGAGCTGCGCCGGCACGGCCACCTGGAGATCCGGGAGGCGGGCTTCCGCTATCCGGGAGCAGA
GGAGCCGGTGCTGAGGTCCATCGGGCTGGAGGCCCGGCCGGGCGAGACGACGGCCGTGATCGGCTCGACCGGCAGCGGCA
AGTCCACCCTGCTCGGTCTGGTCCCGCGGCTGTTCGACGCCACCGAGGGCCAGGTGCTGGTGGACGGCGTCGACGTGCAG
GAGGTCGAGCCCGCTCTGCTGGCCAGGACGGTCGGCCTGGTGCCGCAGAAGCCGTACCTGTTCGCCGGCACGGTCGCGAC
CAACCTGCGCTACGGCAATCCGGACGCCACCGACGAGGAGCTGTGGCACGCGCTGGAGGTGGCGCAGGCCAAGGGCTTCG
TGGAGCGGCTGGACGGCGGCCTGGACGCGGTGATCGCGCAGGGCGGCACGAACGTGTCGGGCGGCCAGCGCCAGCGTCTG
GCCATCGCGCGCACGCTGGTGCAGCGCCCGGAGATCTACCTCTTCGACGACTCCTTCTCCGCGCTCGACTACGCGACGGA
CGCGGCGCTGCGCGCGGCGCTCGCCGAGGAGACGGCCGAGGCGACCGTCGTCATCGTCGCCCAGCGGGTGGCGACCATCC
GGGACGCGGACCGGATCATCGTCCTCGACGAGGGACGGGTGGTCGGCTCGGGCCGCCACCACGAACTCATGGCGGGCAAC
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTCACGGAAGCGGAGGCTGCCTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(352-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.603

97.747

0.397