Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   MPF93_RS07175 Genome accession   NZ_CP094178
Coordinates   1480484..1480765 (-) Length   93 a.a.
NCBI ID   WP_000110697.1    Uniprot ID   M3NIW1
Organism   Helicobacter pylori strain Hpfe060     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1475484..1485765
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPF93_RS07155 (MPF93_07155) - 1476196..1477536 (-) 1341 WP_245073620.1 hypothetical protein -
  MPF93_RS07165 (MPF93_07165) comB4 1477856..1480219 (-) 2364 WP_245073622.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  MPF93_RS07170 (MPF93_07170) comB3 1480221..1480484 (-) 264 WP_000584953.1 hypothetical protein Machinery gene
  MPF93_RS07175 (MPF93_07175) comB2 1480484..1480765 (-) 282 WP_000110697.1 TrbC/VirB2 family protein Machinery gene
  MPF93_RS07180 (MPF93_07180) - 1480910..1481737 (-) 828 WP_245073624.1 DUF5718 family protein -
  MPF93_RS07185 (MPF93_07185) - 1481828..1482880 (-) 1053 WP_075658225.1 MnmA/TRMU family protein -
  MPF93_RS07190 (MPF93_07190) dnaG 1482877..1484556 (-) 1680 WP_245073626.1 DNA primase -
  MPF93_RS07195 (MPF93_07195) groES 1484831..1485187 (+) 357 WP_000671959.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10567.87 Da        Isoelectric Point: 9.1450

>NTDB_id=668067 MPF93_RS07175 WP_000110697.1 1480484..1480765(-) (comB2) [Helicobacter pylori strain Hpfe060]
MSVHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=668067 MPF93_RS07175 WP_000110697.1 1480484..1480765(-) (comB2) [Helicobacter pylori strain Hpfe060]
ATGTCCGTTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAGGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCTCCGAGTTTAGCGAATTGGTTCATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB M3NIW1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

97.849

100

0.978

Multiple sequence alignment