Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   MPG60_RS07030 Genome accession   NZ_CP094177
Coordinates   1465524..1465805 (-) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori strain Hpfe062     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1460524..1470805
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG60_RS07010 (MPG60_07010) - 1461234..1462574 (-) 1341 WP_205583265.1 hypothetical protein -
  MPG60_RS07020 (MPG60_07020) comB4 1462895..1465258 (-) 2364 WP_245084484.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  MPG60_RS07025 (MPG60_07025) comB3 1465261..1465524 (-) 264 WP_000584955.1 hypothetical protein Machinery gene
  MPG60_RS07030 (MPG60_07030) comB2 1465524..1465805 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  MPG60_RS07035 (MPG60_07035) - 1465950..1466777 (-) 828 WP_245084486.1 DUF5718 family protein -
  MPG60_RS07040 (MPG60_07040) - 1466868..1467920 (-) 1053 WP_245084488.1 MnmA/TRMU family protein -
  MPG60_RS07045 (MPG60_07045) dnaG 1467917..1469596 (-) 1680 WP_245084490.1 DNA primase -
  MPG60_RS07050 (MPG60_07050) groES 1469869..1470225 (+) 357 WP_000671954.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=668047 MPG60_RS07030 WP_001272686.1 1465524..1465805(-) (comB2) [Helicobacter pylori strain Hpfe062]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=668047 MPG60_RS07030 WP_001272686.1 1465524..1465805(-) (comB2) [Helicobacter pylori strain Hpfe062]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGATTAGAAGGGTT
TTTTAATGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGTGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTAGCGAATTGGTTCATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989

Multiple sequence alignment