Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   MPG43_RS07065 Genome accession   NZ_CP094175
Coordinates   1472560..1472841 (-) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori strain Hpfe063     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1467560..1477841
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG43_RS07045 (MPG43_07045) - 1468271..1469611 (-) 1341 WP_245030321.1 hypothetical protein -
  MPG43_RS07055 (MPG43_07055) comB4 1469931..1472294 (-) 2364 WP_245030323.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  MPG43_RS07060 (MPG43_07060) comB3 1472297..1472560 (-) 264 WP_000584942.1 hypothetical protein Machinery gene
  MPG43_RS07065 (MPG43_07065) comB2 1472560..1472841 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  MPG43_RS07070 (MPG43_07070) - 1472986..1473813 (-) 828 WP_088296904.1 DUF5718 family protein -
  MPG43_RS07075 (MPG43_07075) - 1473905..1474957 (-) 1053 WP_245030325.1 MnmA/TRMU family protein -
  MPG43_RS07080 (MPG43_07080) dnaG 1474954..1476633 (-) 1680 WP_245030328.1 DNA primase -
  MPG43_RS07085 (MPG43_07085) groES 1476910..1477266 (+) 357 WP_000671954.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=668026 MPG43_RS07065 WP_001272686.1 1472560..1472841(-) (comB2) [Helicobacter pylori strain Hpfe063]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=668026 MPG43_RS07065 WP_001272686.1 1472560..1472841(-) (comB2) [Helicobacter pylori strain Hpfe063]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAGGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATTCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTAGCGAATTGGTTCATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989

Multiple sequence alignment