Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   MPG49_RS07245 Genome accession   NZ_CP094173
Coordinates   1505520..1505801 (-) Length   93 a.a.
NCBI ID   WP_078243026.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe0001     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1500520..1510801
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG49_RS07225 (MPG49_07225) - 1501250..1502590 (-) 1341 WP_245021689.1 hypothetical protein -
  MPG49_RS07235 (MPG49_07235) comB4 1502892..1505255 (-) 2364 WP_245052195.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  MPG49_RS07240 (MPG49_07240) comB3 1505257..1505520 (-) 264 WP_000584970.1 hypothetical protein Machinery gene
  MPG49_RS07245 (MPG49_07245) comB2 1505520..1505801 (-) 282 WP_078243026.1 TrbC/VirB2 family protein Machinery gene
  MPG49_RS07250 (MPG49_07250) - 1505946..1506773 (-) 828 WP_245052197.1 DUF5718 family protein -
  MPG49_RS07255 (MPG49_07255) - 1506864..1507916 (-) 1053 WP_245052199.1 MnmA/TRMU family protein -
  MPG49_RS07260 (MPG49_07260) dnaG 1507913..1509592 (-) 1680 WP_245052201.1 DNA primase -
  MPG49_RS07265 (MPG49_07265) groES 1509867..1510223 (+) 357 WP_029567689.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10507.75 Da        Isoelectric Point: 9.1450

>NTDB_id=668003 MPG49_RS07245 WP_078243026.1 1505520..1505801(-) (comB2) [Helicobacter pylori strain Hpfe0001]
MSAHFLKIIFLVGVCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=668003 MPG49_RS07245 WP_078243026.1 1505520..1505801(-) (comB2) [Helicobacter pylori strain Hpfe0001]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCGTGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAGGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGTGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTAGCGAATTGGTTCATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

97.849

100

0.978

Multiple sequence alignment