Detailed information
Bioinformatically predicted
Overview
| Name | comB2 | Type | Machinery gene |
| Locus tag | MPG23_RS03045 | Genome accession | NZ_CP094172 |
| Coordinates | 646420..646704 (+) | Length | 94 a.a. |
| NCBI ID | WP_000736478.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain Hpfe0002 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 641420..651704
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MPG23_RS03010 (MPG23_03010) | cagT | 641766..642608 (+) | 843 | WP_245089416.1 | cag pathogenicity island Cag12 family protein | - |
| MPG23_RS03015 (MPG23_03015) | cagS | 642810..643409 (-) | 600 | WP_000069579.1 | cag pathogenicity island protein CagS | - |
| MPG23_RS03020 (MPG23_03020) | - | 644099..644289 (+) | 191 | Protein_583 | hypothetical protein | - |
| MPG23_RS03025 (MPG23_03025) | - | 644318..644623 (+) | 306 | WP_245089419.1 | cag pathogenicity island protein | - |
| MPG23_RS03030 (MPG23_03030) | - | 644679..644834 (+) | 156 | WP_220916376.1 | hypothetical protein | - |
| MPG23_RS03035 (MPG23_03035) | - | 645052..645840 (+) | 789 | WP_245089422.1 | integrase | - |
| MPG23_RS03040 (MPG23_03040) | - | 645944..646423 (+) | 480 | WP_245089425.1 | hypothetical protein | - |
| MPG23_RS03045 (MPG23_03045) | comB2 | 646420..646704 (+) | 285 | WP_000736478.1 | TrbC/VirB2 family protein | Machinery gene |
| MPG23_RS03050 (MPG23_03050) | comB3 | 646715..646978 (+) | 264 | WP_001177712.1 | hypothetical protein | Machinery gene |
| MPG23_RS03055 (MPG23_03055) | - | 646989..647225 (+) | 237 | WP_001183709.1 | hypothetical protein | - |
| MPG23_RS03060 (MPG23_03060) | - | 647225..649801 (+) | 2577 | WP_245089428.1 | VirB4 family type IV secretion/conjugal transfer ATPase | - |
| MPG23_RS03065 (MPG23_03065) | - | 649803..649937 (+) | 135 | WP_021301032.1 | hypothetical protein | - |
| MPG23_RS03070 (MPG23_03070) | - | 649930..651102 (+) | 1173 | WP_180441010.1 | VirB8/TrbF family protein | - |
Sequence
Protein
Download Length: 94 a.a. Molecular weight: 10683.00 Da Isoelectric Point: 10.9123
>NTDB_id=667966 MPG23_RS03045 WP_000736478.1 646420..646704(+) (comB2) [Helicobacter pylori strain Hpfe0002]
MKKLSHFRKLIAFLGFSPLLLQADMTTFFNSIEQQLTSPTAKGILMVIFLGLAIFIWKNLDRWKEILMTVLAIAIGAAIF
FKAPALANWFMSIF
MKKLSHFRKLIAFLGFSPLLLQADMTTFFNSIEQQLTSPTAKGILMVIFLGLAIFIWKNLDRWKEILMTVLAIAIGAAIF
FKAPALANWFMSIF
Nucleotide
Download Length: 285 bp
>NTDB_id=667966 MPG23_RS03045 WP_000736478.1 646420..646704(+) (comB2) [Helicobacter pylori strain Hpfe0002]
ATGAAAAAATTAAGTCATTTTAGAAAGCTCATCGCCTTTTTAGGTTTTTCACCACTTTTACTACAAGCGGATATGACTAC
CTTTTTTAATAGTATTGAACAACAACTCACTAGCCCCACCGCTAAGGGTATTTTGATGGTCATTTTTTTAGGGCTTGCTA
TTTTTATATGGAAAAATTTAGACAGATGGAAAGAAATCTTAATGACAGTCCTTGCTATTGCCATAGGTGCTGCAATCTTT
TTTAAAGCCCCAGCCTTAGCTAATTGGTTTATGAGTATTTTTTAA
ATGAAAAAATTAAGTCATTTTAGAAAGCTCATCGCCTTTTTAGGTTTTTCACCACTTTTACTACAAGCGGATATGACTAC
CTTTTTTAATAGTATTGAACAACAACTCACTAGCCCCACCGCTAAGGGTATTTTGATGGTCATTTTTTTAGGGCTTGCTA
TTTTTATATGGAAAAATTTAGACAGATGGAAAGAAATCTTAATGACAGTCCTTGCTATTGCCATAGGTGCTGCAATCTTT
TTTAAAGCCCCAGCCTTAGCTAATTGGTTTATGAGTATTTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB2 | Helicobacter pylori 26695 |
57.143 |
96.809 |
0.553 |