Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   MPG20_RS07020 Genome accession   NZ_CP094171
Coordinates   1470283..1470546 (-) Length   87 a.a.
NCBI ID   WP_245074142.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe0003     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1465283..1475546
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG20_RS07005 (MPG20_07005) - 1466276..1467616 (-) 1341 WP_180604040.1 hypothetical protein -
  MPG20_RS07015 (MPG20_07015) comB4 1467918..1470281 (-) 2364 WP_245074141.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  MPG20_RS07020 (MPG20_07020) comB3 1470283..1470546 (-) 264 WP_245074142.1 competence protein ComB Machinery gene
  MPG20_RS07025 (MPG20_07025) comB2 1470546..1470827 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  MPG20_RS07030 (MPG20_07030) - 1470972..1471799 (-) 828 WP_245074143.1 DUF5718 family protein -
  MPG20_RS07035 (MPG20_07035) - 1471891..1472943 (-) 1053 WP_245074144.1 MnmA/TRMU family protein -
  MPG20_RS07040 (MPG20_07040) dnaG 1472940..1474619 (-) 1680 WP_245074145.1 DNA primase -
  MPG20_RS07045 (MPG20_07045) groES 1474896..1475252 (+) 357 WP_220836691.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10102.25 Da        Isoelectric Point: 9.5507

>NTDB_id=667956 MPG20_RS07020 WP_245074142.1 1470283..1470546(-) (comB3) [Helicobacter pylori strain Hpfe0003]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFVPFILLPWIDLLIAFLLYLGFLALFSVLEFFDEDIADIIIARSKIKT
KTKCYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=667956 MPG20_RS07020 WP_245074142.1 1470283..1470546(-) (comB3) [Helicobacter pylori strain Hpfe0003]
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGTGCCTTTTATCTTGCTCCCTTGGATTGATTTGTTGATCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTGGAATTTTTTGATGAGGATATTGCAGATATTATTATTGCTAGAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

95.402

100

0.954

Multiple sequence alignment