Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   MPG42_RS00695 Genome accession   NZ_CP094167
Coordinates   151087..151824 (+) Length   245 a.a.
NCBI ID   WP_075708163.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe0007     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 146087..156824
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG42_RS00670 (MPG42_00670) panD 148228..148578 (+) 351 WP_245013585.1 aspartate 1-decarboxylase -
  MPG42_RS00675 (MPG42_00675) - 148589..148882 (+) 294 WP_000347923.1 YbaB/EbfC family nucleoid-associated protein -
  MPG42_RS00680 (MPG42_00680) - 148882..149886 (+) 1005 WP_245013902.1 PDZ domain-containing protein -
  MPG42_RS00685 (MPG42_00685) comB6 149894..150949 (+) 1056 WP_245013903.1 P-type conjugative transfer protein TrbL Machinery gene
  MPG42_RS00690 (MPG42_00690) comB7 150965..151090 (+) 126 WP_001217874.1 hypothetical protein Machinery gene
  MPG42_RS00695 (MPG42_00695) comB8 151087..151824 (+) 738 WP_075708163.1 virB8 family protein Machinery gene
  MPG42_RS00700 (MPG42_00700) comB9 151824..152786 (+) 963 WP_245013588.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  MPG42_RS00705 (MPG42_00705) comB10 152779..153915 (+) 1137 WP_245028535.1 DNA type IV secretion system protein ComB10 Machinery gene
  MPG42_RS00710 (MPG42_00710) - 153985..155397 (+) 1413 WP_245028537.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  MPG42_RS00715 (MPG42_00715) gmd 155411..156556 (+) 1146 WP_245028539.1 GDP-mannose 4,6-dehydratase -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 28516.72 Da        Isoelectric Point: 8.9546

>NTDB_id=667879 MPG42_RS00695 WP_075708163.1 151087..151824(+) (comB8) [Helicobacter pylori strain Hpfe0007]
MKEKPFNSEQLIYLEELLSHQEKHLENKLSGFSVNDLDMQSVFRLERNRLKIAYKLLGLMSFIALVLAIVLISVLPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
AQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLMNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKVTRYSITEI
TNRGD

Nucleotide


Download         Length: 738 bp        

>NTDB_id=667879 MPG42_RS00695 WP_075708163.1 151087..151824(+) (comB8) [Helicobacter pylori strain Hpfe0007]
ATGAAAGAAAAGCCTTTCAATAGCGAGCAATTGATCTATTTAGAAGAGCTTTTAAGCCATCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAATGATTTGGACATGCAAAGCGTGTTTAGATTAGAGAGGAACCGCTTGAAAATCGCTT
ATAAACTCTTAGGCTTGATGAGTTTTATCGCTCTTGTTTTAGCGATTGTTTTAATCAGTGTTTTACCCCTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAGGACAAGCATTACGCCATTATCCAAAGAGCGGATAAAAGCATTTCCAGTAA
TGAAGCGTTGGCTCGTTCGCTTATTGGGGCGTATGTGTTAAACCGAGAGAGTATTAATCGCATTGACGATAAATCGCGCT
ATGAATTGGTGCGCTTGCAAAGCAGTTCTAAAGTGTGGCAACGCTTTGAGGACTTAATCAAAACGCAAAACAGCATTTAT
GCACAAAGCCATTTGGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
CTCCATTGCGGCTAAACTCATGAACGAAAACAAGCTGGTGTATGAAAAGCGTTATAAAATCGTGCTGAGTTATTTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAGTCACTCGCTACAGCATCACTGAAATC
ACTAATAGGGGCGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

96.356

100

0.971

Multiple sequence alignment