Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   MPG18_RS07305 Genome accession   NZ_CP094165
Coordinates   1527261..1527524 (-) Length   87 a.a.
NCBI ID   WP_000584942.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe0011     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1522261..1532524
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG18_RS07290 (MPG18_07290) - 1523235..1524575 (-) 1341 WP_245021689.1 hypothetical protein -
  MPG18_RS07300 (MPG18_07300) comB4 1524896..1527259 (-) 2364 WP_245077955.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  MPG18_RS07305 (MPG18_07305) comB3 1527261..1527524 (-) 264 WP_000584942.1 hypothetical protein Machinery gene
  MPG18_RS07310 (MPG18_07310) comB2 1527524..1527805 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  MPG18_RS07315 (MPG18_07315) - 1527950..1528777 (-) 828 WP_245077957.1 DUF5718 family protein -
  MPG18_RS07320 (MPG18_07320) - 1528867..1529919 (-) 1053 WP_245077959.1 MnmA/TRMU family protein -
  MPG18_RS07325 (MPG18_07325) dnaG 1529916..1531595 (-) 1680 WP_245077961.1 DNA primase -
  MPG18_RS07330 (MPG18_07330) groES 1531872..1532228 (+) 357 WP_180416708.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10062.15 Da        Isoelectric Point: 9.5507

>NTDB_id=667873 MPG18_RS07305 WP_000584942.1 1527261..1527524(-) (comB3) [Helicobacter pylori strain Hpfe0011]
MIILSASVKNLREISVKEKFLWLNAKSYLISIFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIIARSKIKT
KTKCYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=667873 MPG18_RS07305 WP_000584942.1 1527261..1527524(-) (comB3) [Helicobacter pylori strain Hpfe0011]
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTATTTTCGCACCTTTTATTTTGCTCCCTTGGATTGATTTGCTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGTTGGAATTTTTTGATGAAGATATTGCAGATATTATTATTGCTAGAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

96.552

100

0.966

Multiple sequence alignment