Detailed information
Bioinformatically predicted
Overview
| Name | comB3 | Type | Machinery gene |
| Locus tag | MPG84_RS07270 | Genome accession | NZ_CP094164 |
| Coordinates | 1532374..1532637 (-) | Length | 87 a.a. |
| NCBI ID | WP_000584971.1 | Uniprot ID | A0A0L0QIL1 |
| Organism | Helicobacter pylori strain Hpfe0012 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1527374..1537637
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MPG84_RS07255 (MPG84_07255) | - | 1528349..1529689 (-) | 1341 | WP_041201979.1 | hypothetical protein | - |
| MPG84_RS07265 (MPG84_07265) | comB4 | 1530009..1532372 (-) | 2364 | WP_245059355.1 | VirB4 family type IV secretion/conjugal transfer ATPase | Machinery gene |
| MPG84_RS07270 (MPG84_07270) | comB3 | 1532374..1532637 (-) | 264 | WP_000584971.1 | hypothetical protein | Machinery gene |
| MPG84_RS07275 (MPG84_07275) | comB2 | 1532637..1532918 (-) | 282 | WP_001272686.1 | TrbC/VirB2 family protein | Machinery gene |
| MPG84_RS07280 (MPG84_07280) | - | 1533063..1533890 (-) | 828 | WP_245013457.1 | DUF5718 family protein | - |
| MPG84_RS07285 (MPG84_07285) | - | 1533979..1535031 (-) | 1053 | WP_245059357.1 | MnmA/TRMU family protein | - |
| MPG84_RS07290 (MPG84_07290) | dnaG | 1535028..1536707 (-) | 1680 | WP_245059359.1 | DNA primase | - |
| MPG84_RS07295 (MPG84_07295) | groES | 1536982..1537338 (+) | 357 | WP_245059365.1 | co-chaperone GroES | - |
Sequence
Protein
Download Length: 87 a.a. Molecular weight: 10076.17 Da Isoelectric Point: 9.5507
>NTDB_id=667849 MPG84_RS07270 WP_000584971.1 1532374..1532637(-) (comB3) [Helicobacter pylori strain Hpfe0012]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFVPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIIARSKIKT
KTKCYRA
MIILSASVKNLREISVKEKFLWLNAKSYLISVFVPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIIARSKIKT
KTKCYRA
Nucleotide
Download Length: 264 bp
>NTDB_id=667849 MPG84_RS07270 WP_000584971.1 1532374..1532637(-) (comB3) [Helicobacter pylori strain Hpfe0012]
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGTGCCTTTTATTTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTAGAATTTTTTGATGAAGATATTGCAGATATTATTATTGCTAGAAGCAAAATAAAGACC
AAAACCAAATGTTATAGAGCGTAG
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGTGCCTTTTATTTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTAGAATTTTTTGATGAAGATATTGCAGATATTATTATTGCTAGAAGCAAAATAAAGACC
AAAACCAAATGTTATAGAGCGTAG
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB3 | Helicobacter pylori 26695 |
96.552 |
100 |
0.966 |