Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   MPG84_RS06825 Genome accession   NZ_CP094164
Coordinates   1437744..1438028 (-) Length   94 a.a.
NCBI ID   WP_000736478.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe0012     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1432744..1443028
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG84_RS06800 (MPG84_06800) - 1433349..1434516 (-) 1168 Protein_1323 VirB8/TrbF family protein -
  MPG84_RS06805 (MPG84_06805) - 1434509..1434643 (-) 135 WP_000738749.1 hypothetical protein -
  MPG84_RS06810 (MPG84_06810) - 1434640..1437222 (-) 2583 Protein_1325 VirB4 family type IV secretion/conjugal transfer ATPase -
  MPG84_RS06815 (MPG84_06815) - 1437222..1437458 (-) 237 WP_001183709.1 hypothetical protein -
  MPG84_RS06820 (MPG84_06820) comB3 1437469..1437732 (-) 264 WP_108336611.1 competence protein ComB Machinery gene
  MPG84_RS06825 (MPG84_06825) comB2 1437744..1438028 (-) 285 WP_000736478.1 TrbC/VirB2 family protein Machinery gene
  MPG84_RS06830 (MPG84_06830) - 1438025..1438504 (-) 480 WP_195834060.1 hypothetical protein -
  MPG84_RS06835 (MPG84_06835) - 1438608..1439396 (-) 789 WP_245059264.1 integrase -
  MPG84_RS06840 (MPG84_06840) rpoD 1439582..1441609 (+) 2028 WP_245059266.1 RNA polymerase sigma factor RpoD -
  MPG84_RS06845 (MPG84_06845) - 1441630..1442994 (+) 1365 WP_245059268.1 SH3 domain-containing C40 family peptidase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10683.00 Da        Isoelectric Point: 10.9123

>NTDB_id=667845 MPG84_RS06825 WP_000736478.1 1437744..1438028(-) (comB2) [Helicobacter pylori strain Hpfe0012]
MKKLSHFRKLIAFLGFSPLLLQADMTTFFNSIEQQLTSPTAKGILMVIFLGLAIFIWKNLDRWKEILMTVLAIAIGAAIF
FKAPALANWFMSIF

Nucleotide


Download         Length: 285 bp        

>NTDB_id=667845 MPG84_RS06825 WP_000736478.1 1437744..1438028(-) (comB2) [Helicobacter pylori strain Hpfe0012]
ATGAAAAAATTAAGTCATTTTAGAAAGCTCATCGCCTTTTTAGGTTTTTCACCACTTTTACTACAAGCGGATATGACTAC
CTTTTTTAATAGTATTGAACAACAACTCACTAGTCCCACCGCTAAGGGTATTTTGATGGTTATTTTTTTAGGACTTGCTA
TTTTTATATGGAAAAATTTAGACAGATGGAAAGAAATTTTAATGACCGTGCTTGCTATTGCAATTGGTGCTGCAATCTTT
TTTAAAGCCCCAGCCTTAGCTAATTGGTTTATGAGTATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(4-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

57.143

96.809

0.553

Multiple sequence alignment