Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   MPF84_RS07235 Genome accession   NZ_CP094149
Coordinates   1514599..1514862 (-) Length   87 a.a.
NCBI ID   WP_000584953.1    Uniprot ID   A0AAV3IGW5
Organism   Helicobacter pylori strain Hpfe023     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1509599..1519862
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPF84_RS07220 (MPF84_07220) - 1510572..1512002 (-) 1431 WP_180425991.1 COG3014 family protein -
  MPF84_RS07230 (MPF84_07230) comB4 1512234..1514597 (-) 2364 WP_245085656.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  MPF84_RS07235 (MPF84_07235) comB3 1514599..1514862 (-) 264 WP_000584953.1 hypothetical protein Machinery gene
  MPF84_RS07240 (MPF84_07240) comB2 1514862..1515143 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  MPF84_RS07245 (MPF84_07245) - 1515288..1516115 (-) 828 WP_245085658.1 DUF5718 family protein -
  MPF84_RS07250 (MPF84_07250) - 1516206..1517258 (-) 1053 WP_000721194.1 MnmA/TRMU family protein -
  MPF84_RS07255 (MPF84_07255) dnaG 1517255..1518934 (-) 1680 WP_245085660.1 DNA primase -
  MPF84_RS07260 (MPF84_07260) groES 1519208..1519564 (+) 357 WP_000671958.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10020.11 Da        Isoelectric Point: 9.5290

>NTDB_id=667651 MPF84_RS07235 WP_000584953.1 1514599..1514862(-) (comB3) [Helicobacter pylori strain Hpfe023]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIIAKSKIKT
KTKCYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=667651 MPF84_RS07235 WP_000584953.1 1514599..1514862(-) (comB3) [Helicobacter pylori strain Hpfe023]
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGCGCCTTTTATTTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGATATTGCAGATATTATTATTGCCAAAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

98.851

100

0.989

Multiple sequence alignment