Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   H7R13_RS01920 Genome accession   NZ_AP022215
Coordinates   417484..417951 (-) Length   155 a.a.
NCBI ID   WP_000339836.1    Uniprot ID   -
Organism   Escherichia coli strain WP8-S17-ESBL-05     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 412484..422951
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7R13_RS01895 (WP8S17E05_03790) rpsG 412625..413095 (+) 471 WP_001138043.1 30S ribosomal protein S7 -
  H7R13_RS01900 (WP8S17E05_03800) fusA 413192..415306 (+) 2115 WP_000124700.1 elongation factor G -
  H7R13_RS01905 (WP8S17E05_03810) tuf 415377..416561 (+) 1185 WP_000031783.1 elongation factor Tu -
  H7R13_RS01910 (WP8S17E05_03820) bfd 416744..416938 (+) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  H7R13_RS01915 (WP8S17E05_03830) bfr 417011..417487 (+) 477 WP_000675515.1 bacterioferritin -
  H7R13_RS01920 (WP8S17E05_03840) pilD 417484..417951 (-) 468 WP_000339836.1 A24 family peptidase Machinery gene
  H7R13_RS01925 (WP8S17E05_03850) rpsJ 418330..418641 (+) 312 WP_001181004.1 30S ribosomal protein S10 -
  H7R13_RS01930 (WP8S17E05_03860) rplC 418674..419303 (+) 630 WP_000579833.1 50S ribosomal protein L3 -
  H7R13_RS01935 (WP8S17E05_03870) rplD 419314..419919 (+) 606 WP_000424395.1 50S ribosomal protein L4 -
  H7R13_RS01940 (WP8S17E05_03880) rplW 419916..420218 (+) 303 WP_000617544.1 50S ribosomal protein L23 -
  H7R13_RS01945 (WP8S17E05_03890) rplB 420236..421057 (+) 822 WP_000301864.1 50S ribosomal protein L2 -
  H7R13_RS01950 (WP8S17E05_03900) rpsS 421074..421352 (+) 279 WP_001138117.1 30S ribosomal protein S19 -
  H7R13_RS01955 (WP8S17E05_03910) rplV 421367..421699 (+) 333 WP_000447529.1 50S ribosomal protein L22 -
  H7R13_RS01960 (WP8S17E05_03920) rpsC 421717..422418 (+) 702 WP_000529945.1 30S ribosomal protein S3 -
  H7R13_RS01965 (WP8S17E05_03930) rplP 422431..422841 (+) 411 WP_000941212.1 50S ribosomal protein L16 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16951.08 Da        Isoelectric Point: 8.1296

>NTDB_id=66762 H7R13_RS01920 WP_000339836.1 417484..417951(-) (pilD) [Escherichia coli strain WP8-S17-ESBL-05]
MDANLPFLILYACLSVLLFLWDAKHGLLPDRFTCPLLWSGLLFSQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVVGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=66762 H7R13_RS01920 WP_000339836.1 417484..417951(-) (pilD) [Escherichia coli strain WP8-S17-ESBL-05]
ATGGACGCTAACCTTCCCTTTCTGATTTTGTACGCTTGTTTATCTGTCCTACTTTTTTTATGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACCTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTCTCAGGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACCTGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTGTTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGTTGGGATAGTTTGCTAGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(10-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.8

80.645

0.361

Multiple sequence alignment