Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   MPG75_RS07060 Genome accession   NZ_CP094144
Coordinates   1473383..1473664 (-) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori strain Hpfe029     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1468383..1478664
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG75_RS07040 (MPG75_07040) - 1469094..1470434 (-) 1341 WP_180585257.1 hypothetical protein -
  MPG75_RS07050 (MPG75_07050) comB4 1470755..1473118 (-) 2364 WP_245039240.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  MPG75_RS07055 (MPG75_07055) comB3 1473120..1473383 (-) 264 WP_000584953.1 hypothetical protein Machinery gene
  MPG75_RS07060 (MPG75_07060) comB2 1473383..1473664 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  MPG75_RS07065 (MPG75_07065) - 1473809..1474636 (-) 828 WP_245039241.1 DUF5718 family protein -
  MPG75_RS07070 (MPG75_07070) - 1474727..1475779 (-) 1053 WP_120944380.1 MnmA/TRMU family protein -
  MPG75_RS07075 (MPG75_07075) dnaG 1475776..1477455 (-) 1680 WP_245039243.1 DNA primase -
  MPG75_RS07080 (MPG75_07080) groES 1477728..1478084 (+) 357 WP_245039245.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=667565 MPG75_RS07060 WP_001272686.1 1473383..1473664(-) (comB2) [Helicobacter pylori strain Hpfe029]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=667565 MPG75_RS07060 WP_001272686.1 1473383..1473664(-) (comB2) [Helicobacter pylori strain Hpfe029]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAAGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTAGCGAATTGGTTCATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989

Multiple sequence alignment