Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   MPG16_RS07210 Genome accession   NZ_CP094143
Coordinates   1532641..1532922 (-) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori strain Hpfe032     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1527641..1537922
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG16_RS07190 (MPG16_07190) - 1528352..1529692 (-) 1341 WP_172416898.1 hypothetical protein -
  MPG16_RS07200 (MPG16_07200) comB4 1530012..1532375 (-) 2364 WP_245108415.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  MPG16_RS07205 (MPG16_07205) comB3 1532378..1532641 (-) 264 WP_245108416.1 competence protein ComB Machinery gene
  MPG16_RS07210 (MPG16_07210) comB2 1532641..1532922 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  MPG16_RS07215 (MPG16_07215) - 1533067..1533894 (-) 828 WP_024774037.1 DUF5718 family protein -
  MPG16_RS07220 (MPG16_07220) - 1533985..1535037 (-) 1053 WP_245108418.1 MnmA/TRMU family protein -
  MPG16_RS07225 (MPG16_07225) dnaG 1535034..1536713 (-) 1680 WP_245108419.1 DNA primase -
  MPG16_RS07230 (MPG16_07230) groES 1536989..1537345 (+) 357 WP_245108420.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=667544 MPG16_RS07210 WP_001272686.1 1532641..1532922(-) (comB2) [Helicobacter pylori strain Hpfe032]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=667544 MPG16_RS07210 WP_001272686.1 1532641..1532922(-) (comB2) [Helicobacter pylori strain Hpfe032]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGTATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAGGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTGGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAGGCCCCGAGTTTAGCGAATTGGTTCATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989

Multiple sequence alignment