Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   MPG83_RS07110 Genome accession   NZ_CP094140
Coordinates   1499356..1499619 (-) Length   87 a.a.
NCBI ID   WP_000584942.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe035     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1494356..1504619
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG83_RS07095 (MPG83_07095) - 1495329..1496669 (-) 1341 WP_245071233.1 hypothetical protein -
  MPG83_RS07105 (MPG83_07105) comB4 1496990..1499353 (-) 2364 WP_245071235.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  MPG83_RS07110 (MPG83_07110) comB3 1499356..1499619 (-) 264 WP_000584942.1 hypothetical protein Machinery gene
  MPG83_RS07115 (MPG83_07115) comB2 1499619..1499900 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  MPG83_RS07120 (MPG83_07120) - 1500045..1500872 (-) 828 WP_245071237.1 DUF5718 family protein -
  MPG83_RS07125 (MPG83_07125) - 1500963..1502015 (-) 1053 WP_245071239.1 MnmA/TRMU family protein -
  MPG83_RS07130 (MPG83_07130) dnaG 1502012..1503691 (-) 1680 WP_245071241.1 DNA primase -
  MPG83_RS07135 (MPG83_07135) groES 1503967..1504323 (+) 357 WP_000671949.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10062.15 Da        Isoelectric Point: 9.5507

>NTDB_id=667503 MPG83_RS07110 WP_000584942.1 1499356..1499619(-) (comB3) [Helicobacter pylori strain Hpfe035]
MIILSASVKNLREISVKEKFLWLNAKSYLISIFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIIARSKIKT
KTKCYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=667503 MPG83_RS07110 WP_000584942.1 1499356..1499619(-) (comB3) [Helicobacter pylori strain Hpfe035]
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTATTTTTGCGCCTTTTATTTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGTTGGAATTTTTTGATGAAGATATTGCAGATATTATTATTGCTAGAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

96.552

100

0.966

Multiple sequence alignment