Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   MPG53_RS07050 Genome accession   NZ_CP094139
Coordinates   1464802..1465065 (-) Length   87 a.a.
NCBI ID   WP_000584970.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe036     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1459802..1470065
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG53_RS07035 (MPG53_07035) - 1460776..1462206 (-) 1431 WP_162972184.1 COG3014 family protein -
  MPG53_RS07045 (MPG53_07045) comB4 1462437..1464800 (-) 2364 WP_245060330.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  MPG53_RS07050 (MPG53_07050) comB3 1464802..1465065 (-) 264 WP_000584970.1 hypothetical protein Machinery gene
  MPG53_RS07055 (MPG53_07055) comB2 1465065..1465346 (-) 282 WP_128030462.1 TrbC/VirB2 family protein Machinery gene
  MPG53_RS07060 (MPG53_07060) - 1465492..1466319 (-) 828 WP_245060331.1 DUF5718 family protein -
  MPG53_RS07065 (MPG53_07065) - 1466411..1467463 (-) 1053 WP_021306479.1 MnmA/TRMU family protein -
  MPG53_RS07070 (MPG53_07070) dnaG 1467460..1469139 (-) 1680 WP_245060332.1 DNA primase -
  MPG53_RS07075 (MPG53_07075) groES 1469414..1469770 (+) 357 WP_000671954.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10048.16 Da        Isoelectric Point: 9.5290

>NTDB_id=667482 MPG53_RS07050 WP_000584970.1 1464802..1465065(-) (comB3) [Helicobacter pylori strain Hpfe036]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFVPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIIAKSKIKT
KTKCYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=667482 MPG53_RS07050 WP_000584970.1 1464802..1465065(-) (comB3) [Helicobacter pylori strain Hpfe036]
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGTGCCTTTTATCTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGATATTGCAGATATTATTATTGCCAAAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

97.701

100

0.977

Multiple sequence alignment