Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   MPG35_RS07105 Genome accession   NZ_CP094138
Coordinates   1484640..1484903 (-) Length   87 a.a.
NCBI ID   WP_245019547.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe037     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1479640..1489903
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG35_RS07090 (MPG35_07090) - 1480615..1482045 (-) 1431 WP_162972184.1 COG3014 family protein -
  MPG35_RS07100 (MPG35_07100) comB4 1482275..1484638 (-) 2364 WP_245019546.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  MPG35_RS07105 (MPG35_07105) comB3 1484640..1484903 (-) 264 WP_245019547.1 competence protein ComB Machinery gene
  MPG35_RS07110 (MPG35_07110) comB2 1484903..1485184 (-) 282 WP_140496856.1 TrbC/VirB2 family protein Machinery gene
  MPG35_RS07115 (MPG35_07115) - 1485329..1486156 (-) 828 WP_245019548.1 DUF5718 family protein -
  MPG35_RS07120 (MPG35_07120) - 1486248..1487300 (-) 1053 WP_245019549.1 MnmA/TRMU family protein -
  MPG35_RS07125 (MPG35_07125) dnaG 1487297..1488976 (-) 1680 WP_245019550.1 DNA primase -
  MPG35_RS07130 (MPG35_07130) groES 1489253..1489609 (+) 357 WP_000671953.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10096.16 Da        Isoelectric Point: 9.5507

>NTDB_id=667461 MPG35_RS07105 WP_245019547.1 1484640..1484903(-) (comB3) [Helicobacter pylori strain Hpfe037]
MIILSASVKNLREISVKEKFLWLNAKSYLISIFAPFILLPWIDLLSAFLLYLGFLAFFSVLEFFDEDIADIIIARSKIKT
KTKCYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=667461 MPG35_RS07105 WP_245019547.1 1484640..1484903(-) (comB3) [Helicobacter pylori strain Hpfe037]
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTATTTTTGCGCCTTTTATTTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGTTCTTTAGCGTGCTGGAATTTTTTGATGAAGATATTGCAGATATTATTATTGCTAGAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

95.402

100

0.954

Multiple sequence alignment