Detailed information
Bioinformatically predicted
Overview
| Name | comB3 | Type | Machinery gene |
| Locus tag | MPG13_RS07105 | Genome accession | NZ_CP094137 |
| Coordinates | 1481934..1482197 (-) | Length | 87 a.a. |
| NCBI ID | WP_000584955.1 | Uniprot ID | K7YLH7 |
| Organism | Helicobacter pylori strain Hpfe038 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1476934..1487197
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MPG13_RS07090 (MPG13_07090) | - | 1477928..1479268 (-) | 1341 | WP_245083196.1 | hypothetical protein | - |
| MPG13_RS07100 (MPG13_07100) | comB4 | 1479569..1481932 (-) | 2364 | WP_245083198.1 | VirB4 family type IV secretion/conjugal transfer ATPase | Machinery gene |
| MPG13_RS07105 (MPG13_07105) | comB3 | 1481934..1482197 (-) | 264 | WP_000584955.1 | hypothetical protein | Machinery gene |
| MPG13_RS07110 (MPG13_07110) | comB2 | 1482197..1482478 (-) | 282 | WP_001272686.1 | TrbC/VirB2 family protein | Machinery gene |
| MPG13_RS07115 (MPG13_07115) | - | 1482623..1483450 (-) | 828 | WP_120890779.1 | DUF5718 family protein | - |
| MPG13_RS07120 (MPG13_07120) | - | 1483540..1484592 (-) | 1053 | WP_245083200.1 | MnmA/TRMU family protein | - |
| MPG13_RS07125 (MPG13_07125) | dnaG | 1484589..1486268 (-) | 1680 | WP_245083203.1 | DNA primase | - |
| MPG13_RS07130 (MPG13_07130) | groES | 1486540..1486896 (+) | 357 | WP_000671954.1 | co-chaperone GroES | - |
Sequence
Protein
Download Length: 87 a.a. Molecular weight: 10048.12 Da Isoelectric Point: 9.5507
>NTDB_id=667441 MPG13_RS07105 WP_000584955.1 1481934..1482197(-) (comB3) [Helicobacter pylori strain Hpfe038]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIIARSKIKT
KTKCYRA
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIIARSKIKT
KTKCYRA
Nucleotide
Download Length: 264 bp
>NTDB_id=667441 MPG13_RS07105 WP_000584955.1 1481934..1482197(-) (comB3) [Helicobacter pylori strain Hpfe038]
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTCTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTCGCGCCTTTTATCTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGATATTGCAGATATTATTATTGCCAGAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTCTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTCGCGCCTTTTATCTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGATATTGCAGATATTATTATTGCCAGAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB3 | Helicobacter pylori 26695 |
97.701 |
100 |
0.977 |