Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   MPF95_RS07290 Genome accession   NZ_CP094136
Coordinates   1531198..1531461 (-) Length   87 a.a.
NCBI ID   WP_021309156.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe039     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1526198..1536461
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPF95_RS07275 (MPF95_07275) - 1527171..1528511 (-) 1341 WP_180756186.1 hypothetical protein -
  MPF95_RS07285 (MPF95_07285) comB4 1528832..1531195 (-) 2364 WP_245066856.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  MPF95_RS07290 (MPF95_07290) comB3 1531198..1531461 (-) 264 WP_021309156.1 hypothetical protein Machinery gene
  MPF95_RS07295 (MPF95_07295) comB2 1531461..1531742 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  MPF95_RS07300 (MPF95_07300) - 1531887..1532714 (-) 828 WP_245066857.1 DUF5718 family protein -
  MPF95_RS07305 (MPF95_07305) - 1532805..1533857 (-) 1053 WP_245066858.1 MnmA/TRMU family protein -
  MPF95_RS07310 (MPF95_07310) dnaG 1533854..1535533 (-) 1680 WP_245066859.1 DNA primase -
  MPF95_RS07315 (MPF95_07315) groES 1535809..1536165 (+) 357 WP_000671953.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10106.20 Da        Isoelectric Point: 9.5507

>NTDB_id=667421 MPF95_RS07290 WP_021309156.1 1531198..1531461(-) (comB3) [Helicobacter pylori strain Hpfe039]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFVPFILLPWIDLLSTFLLYLGFLALFSVLEFFDEDIADIIIARSKIKT
KTKCYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=667421 MPF95_RS07290 WP_021309156.1 1531198..1531461(-) (comB3) [Helicobacter pylori strain Hpfe039]
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTGTGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGTGCCTTTTATTTTGCTCCCTTGGATTGATTTGTTGAGCACTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGATATTGCAGATATTATTATTGCTAGAAGCAAAATAAAGACC
AAAACCAAATGTTATAGAGCGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

95.402

100

0.954

Multiple sequence alignment