Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   MPG57_RS07255 Genome accession   NZ_CP094132
Coordinates   1518540..1518803 (-) Length   87 a.a.
NCBI ID   WP_000584953.1    Uniprot ID   A0AAV3IGW5
Organism   Helicobacter pylori strain Hpfe051     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1513540..1523803
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG57_RS07240 (MPG57_07240) - 1514514..1515854 (-) 1341 WP_180527156.1 hypothetical protein -
  MPG57_RS07250 (MPG57_07250) comB4 1516175..1518538 (-) 2364 WP_245080996.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  MPG57_RS07255 (MPG57_07255) comB3 1518540..1518803 (-) 264 WP_000584953.1 hypothetical protein Machinery gene
  MPG57_RS07260 (MPG57_07260) comB2 1518803..1519084 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  MPG57_RS07265 (MPG57_07265) - 1519229..1520056 (-) 828 WP_245080998.1 DUF5718 family protein -
  MPG57_RS07270 (MPG57_07270) - 1520147..1521199 (-) 1053 WP_245080999.1 MnmA/TRMU family protein -
  MPG57_RS07275 (MPG57_07275) dnaG 1521196..1522875 (-) 1680 WP_245081000.1 DNA primase -
  MPG57_RS07280 (MPG57_07280) groES 1523153..1523509 (+) 357 WP_154481863.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10020.11 Da        Isoelectric Point: 9.5290

>NTDB_id=667334 MPG57_RS07255 WP_000584953.1 1518540..1518803(-) (comB3) [Helicobacter pylori strain Hpfe051]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIIAKSKIKT
KTKCYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=667334 MPG57_RS07255 WP_000584953.1 1518540..1518803(-) (comB3) [Helicobacter pylori strain Hpfe051]
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGCGCCTTTTATCTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGATATTGCAGATATTATTATTGCTAAAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

98.851

100

0.989

Multiple sequence alignment