Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   MPG30_RS06990 Genome accession   NZ_CP094131
Coordinates   1468533..1468814 (-) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori strain Hpfe052     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1463533..1473814
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG30_RS06970 (MPG30_06970) - 1464244..1465674 (-) 1431 WP_180410747.1 COG3014 family protein -
  MPG30_RS06980 (MPG30_06980) comB4 1465905..1468268 (-) 2364 WP_245047644.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  MPG30_RS06985 (MPG30_06985) comB3 1468270..1468533 (-) 264 WP_245047646.1 competence protein ComB Machinery gene
  MPG30_RS06990 (MPG30_06990) comB2 1468533..1468814 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  MPG30_RS06995 (MPG30_06995) - 1468958..1469785 (-) 828 WP_245047648.1 DUF5718 family protein -
  MPG30_RS07000 (MPG30_07000) - 1469876..1470928 (-) 1053 WP_245047650.1 MnmA/TRMU family protein -
  MPG30_RS07005 (MPG30_07005) dnaG 1470925..1472604 (-) 1680 WP_245047652.1 DNA primase -
  MPG30_RS07010 (MPG30_07010) groES 1472879..1473235 (+) 357 WP_000671946.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=667315 MPG30_RS06990 WP_001272686.1 1468533..1468814(-) (comB2) [Helicobacter pylori strain Hpfe052]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=667315 MPG30_RS06990 WP_001272686.1 1468533..1468814(-) (comB2) [Helicobacter pylori strain Hpfe052]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAAGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTAGCGAATTGGTTCATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989

Multiple sequence alignment