Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   MPG79_RS07070 Genome accession   NZ_CP094128
Coordinates   1477587..1477868 (-) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori strain Hpfe055     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1472587..1482868
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG79_RS07050 (MPG79_07050) - 1473297..1474637 (-) 1341 WP_212782414.1 hypothetical protein -
  MPG79_RS07060 (MPG79_07060) comB4 1474958..1477321 (-) 2364 WP_245107428.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  MPG79_RS07065 (MPG79_07065) comB3 1477324..1477587 (-) 264 WP_000584955.1 hypothetical protein Machinery gene
  MPG79_RS07070 (MPG79_07070) comB2 1477587..1477868 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  MPG79_RS07075 (MPG79_07075) - 1478013..1478840 (-) 828 WP_245107429.1 DUF5718 family protein -
  MPG79_RS07080 (MPG79_07080) - 1478931..1479983 (-) 1053 WP_021301516.1 MnmA/TRMU family protein -
  MPG79_RS07085 (MPG79_07085) dnaG 1479980..1481659 (-) 1680 WP_245107430.1 DNA primase -
  MPG79_RS07090 (MPG79_07090) groES 1481936..1482292 (+) 357 WP_000671953.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=667250 MPG79_RS07070 WP_001272686.1 1477587..1477868(-) (comB2) [Helicobacter pylori strain Hpfe055]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=667250 MPG79_RS07070 WP_001272686.1 1477587..1477868(-) (comB2) [Helicobacter pylori strain Hpfe055]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAGGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTAGCGAATTGGTTTATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989

Multiple sequence alignment