Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   MPG06_RS07385 Genome accession   NZ_CP094126
Coordinates   1549710..1549991 (-) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori strain Hpfe056     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1544710..1554991
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG06_RS07365 (MPG06_07365) - 1545422..1546762 (-) 1341 WP_245057685.1 hypothetical protein -
  MPG06_RS07375 (MPG06_07375) comB4 1547082..1549445 (-) 2364 WP_245057687.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  MPG06_RS07380 (MPG06_07380) comB3 1549447..1549710 (-) 264 WP_000584955.1 hypothetical protein Machinery gene
  MPG06_RS07385 (MPG06_07385) comB2 1549710..1549991 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  MPG06_RS07390 (MPG06_07390) - 1550136..1550963 (-) 828 WP_245057689.1 DUF5718 family protein -
  MPG06_RS07395 (MPG06_07395) - 1551054..1552106 (-) 1053 WP_220865892.1 MnmA/TRMU family protein -
  MPG06_RS07400 (MPG06_07400) dnaG 1552103..1553782 (-) 1680 WP_245057691.1 DNA primase -
  MPG06_RS07405 (MPG06_07405) groES 1554056..1554412 (+) 357 WP_000671946.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=667230 MPG06_RS07385 WP_001272686.1 1549710..1549991(-) (comB2) [Helicobacter pylori strain Hpfe056]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=667230 MPG06_RS07385 WP_001272686.1 1549710..1549991(-) (comB2) [Helicobacter pylori strain Hpfe056]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAGGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGAATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATTCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCAAGTTTAGCGAATTGGTTCATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989

Multiple sequence alignment