Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   MPG06_RS04475 Genome accession   NZ_CP094126
Coordinates   933880..934164 (-) Length   94 a.a.
NCBI ID   WP_000736478.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe056     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 928880..939164
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG06_RS04450 (MPG06_04450) - 929543..930706 (-) 1164 WP_245057126.1 VirB8/TrbF family protein -
  MPG06_RS04455 (MPG06_04455) - 930699..930833 (-) 135 WP_000738749.1 hypothetical protein -
  MPG06_RS04460 (MPG06_04460) - 930830..933358 (-) 2529 WP_245057128.1 VirB4 family type IV secretion/conjugal transfer ATPase -
  MPG06_RS04465 (MPG06_04465) - 933358..933594 (-) 237 WP_245057130.1 hypothetical protein -
  MPG06_RS04470 (MPG06_04470) comB3 933606..933869 (-) 264 WP_001177712.1 hypothetical protein Machinery gene
  MPG06_RS04475 (MPG06_04475) comB2 933880..934164 (-) 285 WP_000736478.1 TrbC/VirB2 family protein Machinery gene
  MPG06_RS04480 (MPG06_04480) - 934161..934640 (-) 480 WP_195836226.1 hypothetical protein -
  MPG06_RS04485 (MPG06_04485) - 934744..935532 (-) 789 WP_120945486.1 integrase -
  MPG06_RS04490 (MPG06_04490) - 935707..936462 (+) 756 WP_245057133.1 ABC transporter permease -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10683.00 Da        Isoelectric Point: 10.9123

>NTDB_id=667220 MPG06_RS04475 WP_000736478.1 933880..934164(-) (comB2) [Helicobacter pylori strain Hpfe056]
MKKLSHFRKLIAFLGFSPLLLQADMTTFFNSIEQQLTSPTAKGILMVIFLGLAIFIWKNLDRWKEILMTVLAIAIGAAIF
FKAPALANWFMSIF

Nucleotide


Download         Length: 285 bp        

>NTDB_id=667220 MPG06_RS04475 WP_000736478.1 933880..934164(-) (comB2) [Helicobacter pylori strain Hpfe056]
ATGAAAAAATTAAGTCATTTTAGAAAGCTCATCGCCTTTTTAGGTTTTTCACCACTTTTACTACAAGCGGATATGACTAC
CTTTTTTAATAGTATTGAACAACAACTCACTAGCCCCACCGCTAAGGGTATTTTGATGGTCATTTTTTTAGGGCTTGCTA
TTTTTATATGGAAAAATTTAGACAGATGGAAAGAAATCTTAATGACAGTCCTTGCTATTGCCATAGGCGCTGCAATCTTT
TTTAAAGCCCCAGCCTTAGCTAATTGGTTTATGAGTATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(4-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

57.143

96.809

0.553

Multiple sequence alignment