Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   MPG01_RS02350 Genome accession   NZ_CP094124
Coordinates   473296..473559 (+) Length   87 a.a.
NCBI ID   WP_001177712.1    Uniprot ID   A0AB33Z5Y9
Organism   Helicobacter pylori strain Hpfe057     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 468296..478559
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG01_RS02325 (MPG01_02325) - 469481..470401 (-) 921 Protein_446 hypothetical protein -
  MPG01_RS02330 (MPG01_02330) - 470508..471334 (-) 827 Protein_447 hypothetical protein -
  MPG01_RS02335 (MPG01_02335) - 471634..472422 (+) 789 WP_245038382.1 integrase -
  MPG01_RS02340 (MPG01_02340) - 472526..473005 (+) 480 WP_000571125.1 hypothetical protein -
  MPG01_RS02345 (MPG01_02345) - 473002..473285 (+) 284 Protein_450 TrbC/VirB2 family protein -
  MPG01_RS02350 (MPG01_02350) comB3 473296..473559 (+) 264 WP_001177712.1 hypothetical protein Machinery gene
  MPG01_RS02355 (MPG01_02355) - 473570..473806 (+) 237 WP_001183709.1 hypothetical protein -
  MPG01_RS02360 (MPG01_02360) - 473806..475542 (+) 1737 Protein_453 FtsK/SpoIIIE domain-containing protein -
  MPG01_RS02365 (MPG01_02365) - 475589..476849 (-) 1261 Protein_454 RNA-guided endonuclease TnpB family protein -
  MPG01_RS02375 (MPG01_02375) - 476824..477476 (-) 653 Protein_455 IS607-like element IS607 family transposase -
  MPG01_RS02380 (MPG01_02380) - 477563..478415 (+) 853 Protein_456 transporter -
  MPG01_RS02385 (MPG01_02385) - 478412..478546 (+) 135 WP_245038089.1 type IV secretion system protein VirB7 -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10002.89 Da        Isoelectric Point: 5.7206

>NTDB_id=667194 MPG01_RS02350 WP_001177712.1 473296..473559(+) (comB3) [Helicobacter pylori strain Hpfe057]
MQLVGISVSNLKEISSKEKFLWLNAKSFLIAGFIPFVMIPWLDFLNSLMLYVCFLLVFSIAEFFDEDISDILIAHSKIKT
KTNSFYA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=667194 MPG01_RS02350 WP_001177712.1 473296..473559(+) (comB3) [Helicobacter pylori strain Hpfe057]
ATGCAATTAGTCGGCATTTCAGTTTCTAATCTCAAAGAAATCAGTTCTAAAGAAAAGTTTCTTTGGCTCAATGCTAAGAG
CTTTTTAATCGCAGGATTTATTCCTTTTGTAATGATACCTTGGCTAGATTTTTTAAATTCTTTAATGCTGTATGTGTGCT
TTTTATTGGTTTTTAGCATAGCGGAGTTCTTTGATGAAGATATAAGCGACATTTTAATCGCCCATTCTAAGATTAAAACC
AAAACTAATTCATTTTATGCTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

59.77

100

0.598

Multiple sequence alignment