Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   MPG73_RS07305 Genome accession   NZ_CP094122
Coordinates   1517710..1517991 (-) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori strain Hpfe058     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1512710..1522991
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG73_RS07285 (MPG73_07285) - 1513421..1514761 (-) 1341 WP_001868116.1 hypothetical protein -
  MPG73_RS07295 (MPG73_07295) comB4 1515082..1517445 (-) 2364 WP_245056977.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  MPG73_RS07300 (MPG73_07300) comB3 1517447..1517710 (-) 264 WP_245056978.1 competence protein ComB Machinery gene
  MPG73_RS07305 (MPG73_07305) comB2 1517710..1517991 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  MPG73_RS07310 (MPG73_07310) - 1518136..1518963 (-) 828 WP_245056979.1 DUF5718 family protein -
  MPG73_RS07315 (MPG73_07315) - 1519052..1520104 (-) 1053 WP_245056980.1 MnmA/TRMU family protein -
  MPG73_RS07320 (MPG73_07320) dnaG 1520101..1521780 (-) 1680 WP_245056981.1 DNA primase -
  MPG73_RS07325 (MPG73_07325) groES 1522056..1522412 (+) 357 WP_000671946.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=667185 MPG73_RS07305 WP_001272686.1 1517710..1517991(-) (comB2) [Helicobacter pylori strain Hpfe058]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=667185 MPG73_RS07305 WP_001272686.1 1517710..1517991(-) (comB2) [Helicobacter pylori strain Hpfe058]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGCTTGTTCGCTGAAGGTTTAGAGGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTAGCGAACTGGTTCATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989

Multiple sequence alignment