Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   MPG25_RS07095 Genome accession   NZ_CP094121
Coordinates   1493377..1493658 (-) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori strain Hpfe059     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1488377..1498658
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG25_RS07075 (MPG25_07075) - 1489088..1490428 (-) 1341 WP_180422954.1 hypothetical protein -
  MPG25_RS07085 (MPG25_07085) comB4 1490749..1493112 (-) 2364 WP_245018684.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  MPG25_RS07090 (MPG25_07090) comB3 1493114..1493377 (-) 264 WP_000584971.1 hypothetical protein Machinery gene
  MPG25_RS07095 (MPG25_07095) comB2 1493377..1493658 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  MPG25_RS07100 (MPG25_07100) - 1493803..1494630 (-) 828 WP_001154890.1 DUF5718 family protein -
  MPG25_RS07105 (MPG25_07105) - 1494733..1495785 (-) 1053 WP_180618618.1 MnmA/TRMU family protein -
  MPG25_RS07110 (MPG25_07110) dnaG 1495782..1497461 (-) 1680 WP_245018685.1 DNA primase -
  MPG25_RS07115 (MPG25_07115) groES 1497735..1498091 (+) 357 WP_245018686.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=667163 MPG25_RS07095 WP_001272686.1 1493377..1493658(-) (comB2) [Helicobacter pylori strain Hpfe059]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=667163 MPG25_RS07095 WP_001272686.1 1493377..1493658(-) (comB2) [Helicobacter pylori strain Hpfe059]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAGGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTAGCGAATTGGTTCATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989

Multiple sequence alignment