Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   MPG34_RS07020 Genome accession   NZ_CP094117
Coordinates   1474657..1474938 (-) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori strain Hpfe065     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1469657..1479938
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG34_RS07000 (MPG34_07000) - 1470367..1471707 (-) 1341 WP_245105870.1 hypothetical protein -
  MPG34_RS07010 (MPG34_07010) comB4 1472029..1474392 (-) 2364 WP_245105871.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  MPG34_RS07015 (MPG34_07015) comB3 1474394..1474657 (-) 264 WP_000584953.1 hypothetical protein Machinery gene
  MPG34_RS07020 (MPG34_07020) comB2 1474657..1474938 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  MPG34_RS07025 (MPG34_07025) - 1475083..1475910 (-) 828 WP_245105872.1 DUF5718 family protein -
  MPG34_RS07030 (MPG34_07030) - 1476001..1477053 (-) 1053 WP_245105873.1 MnmA/TRMU family protein -
  MPG34_RS07035 (MPG34_07035) dnaG 1477050..1478729 (-) 1680 WP_245105874.1 DNA primase -
  MPG34_RS07040 (MPG34_07040) groES 1479002..1479358 (+) 357 WP_000671949.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=667103 MPG34_RS07020 WP_001272686.1 1474657..1474938(-) (comB2) [Helicobacter pylori strain Hpfe065]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=667103 MPG34_RS07020 WP_001272686.1 1474657..1474938(-) (comB2) [Helicobacter pylori strain Hpfe065]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAAGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTAGCGAATTGGTTCATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989

Multiple sequence alignment