Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   MPG22_RS07105 Genome accession   NZ_CP094111
Coordinates   1482252..1482515 (-) Length   87 a.a.
NCBI ID   WP_180398559.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe070     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1477252..1487515
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG22_RS07090 (MPG22_07090) - 1478226..1479566 (-) 1341 WP_245065231.1 hypothetical protein -
  MPG22_RS07100 (MPG22_07100) comB4 1479887..1482250 (-) 2364 WP_245065232.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  MPG22_RS07105 (MPG22_07105) comB3 1482252..1482515 (-) 264 WP_180398559.1 competence protein ComB Machinery gene
  MPG22_RS07110 (MPG22_07110) comB2 1482515..1482796 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  MPG22_RS07115 (MPG22_07115) - 1482941..1483768 (-) 828 WP_180473870.1 DUF5718 family protein -
  MPG22_RS07120 (MPG22_07120) - 1483858..1484910 (-) 1053 WP_245065234.1 MnmA/TRMU family protein -
  MPG22_RS07125 (MPG22_07125) dnaG 1484907..1486586 (-) 1680 WP_245065236.1 DNA primase -
  MPG22_RS07130 (MPG22_07130) groES 1486859..1487215 (+) 357 WP_000671954.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10108.20 Da        Isoelectric Point: 9.7585

>NTDB_id=667017 MPG22_RS07105 WP_180398559.1 1482252..1482515(-) (comB3) [Helicobacter pylori strain Hpfe070]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFVPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIIAKSKIKT
KTKYYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=667017 MPG22_RS07105 WP_180398559.1 1482252..1482515(-) (comB3) [Helicobacter pylori strain Hpfe070]
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGTGCCTTTTATCTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGATATTGCAGATATTATTATTGCCAAAAGCAAAATAAAGACT
AAAACCAAATATTATAGAGCGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

96.552

100

0.966

Multiple sequence alignment