Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   MPG22_RS02360 Genome accession   NZ_CP094111
Coordinates   472197..472460 (+) Length   87 a.a.
NCBI ID   WP_001177715.1    Uniprot ID   A0A6J4CYM2
Organism   Helicobacter pylori strain Hpfe070     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 467197..477460
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG22_RS02335 (MPG22_02335) - 468492..469421 (-) 930 WP_245065623.1 hypothetical protein -
  MPG22_RS02340 (MPG22_02340) - 469527..470351 (-) 825 Protein_452 hypothetical protein -
  MPG22_RS02345 (MPG22_02345) - 470651..471439 (+) 789 WP_245065625.1 integrase -
  MPG22_RS02350 (MPG22_02350) - 471543..471905 (+) 363 WP_245065627.1 hypothetical protein -
  MPG22_RS02355 (MPG22_02355) comB2 471902..472186 (+) 285 WP_000736106.1 TrbC/VirB2 family protein Machinery gene
  MPG22_RS02360 (MPG22_02360) comB3 472197..472460 (+) 264 WP_001177715.1 hypothetical protein Machinery gene
  MPG22_RS02365 (MPG22_02365) - 472471..472707 (+) 237 WP_001183709.1 hypothetical protein -
  MPG22_RS02370 (MPG22_02370) - 472707..475288 (+) 2582 Protein_458 VirB4 family type IV secretion/conjugal transfer ATPase -
  MPG22_RS02375 (MPG22_02375) - 475285..475419 (+) 135 WP_000738749.1 hypothetical protein -
  MPG22_RS02380 (MPG22_02380) - 475412..476581 (+) 1170 WP_245065629.1 VirB8/TrbF family protein -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 9988.86 Da        Isoelectric Point: 5.7206

>NTDB_id=667005 MPG22_RS02360 WP_001177715.1 472197..472460(+) (comB3) [Helicobacter pylori strain Hpfe070]
MQLVGISVSNLKEISSKEKFLWLNAKSFLIAGFVPFVMIPWLDFLNSLMLYVCFLLVFSIAEFFDEDISDILIAHSKIKT
KTNSFYA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=667005 MPG22_RS02360 WP_001177715.1 472197..472460(+) (comB3) [Helicobacter pylori strain Hpfe070]
ATGCAATTAGTCGGCATTTCAGTTTCTAATCTCAAAGAAATCAGCTCTAAAGAAAAGTTTCTTTGGCTCAATGCTAAGAG
CTTTTTAATCGCAGGATTTGTGCCTTTTGTAATGATACCTTGGCTAGATTTTTTAAATTCTTTAATGCTGTATGTGTGCT
TTTTATTGGTTTTTAGCATAGCGGAGTTCTTTGATGAAGATATAAGCGACATTTTAATCGCCCATTCTAAGATTAAAACC
AAAACTAATTCATTTTATGCTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6J4CYM2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

59.77

100

0.598