Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   MPG24_RS07220 Genome accession   NZ_CP094110
Coordinates   1521488..1521769 (-) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori strain Hpfe071     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1516488..1526769
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG24_RS07200 (MPG24_07200) - 1517198..1518628 (-) 1431 WP_245104084.1 COG3014 family protein -
  MPG24_RS07210 (MPG24_07210) comB4 1518859..1521222 (-) 2364 WP_245104085.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  MPG24_RS07215 (MPG24_07215) comB3 1521225..1521488 (-) 264 WP_000584955.1 hypothetical protein Machinery gene
  MPG24_RS07220 (MPG24_07220) comB2 1521488..1521769 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  MPG24_RS07225 (MPG24_07225) - 1521914..1522741 (-) 828 WP_024774037.1 DUF5718 family protein -
  MPG24_RS07230 (MPG24_07230) - 1522832..1523884 (-) 1053 WP_245104086.1 MnmA/TRMU family protein -
  MPG24_RS07235 (MPG24_07235) dnaG 1523881..1525560 (-) 1680 WP_245104087.1 DNA primase -
  MPG24_RS07240 (MPG24_07240) groES 1525833..1526189 (+) 357 WP_000671953.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=666995 MPG24_RS07220 WP_001272686.1 1521488..1521769(-) (comB2) [Helicobacter pylori strain Hpfe071]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=666995 MPG24_RS07220 WP_001272686.1 1521488..1521769(-) (comB2) [Helicobacter pylori strain Hpfe071]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTTGCTGAAGGATTAGAAGGGTT
TTTTAATGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTAGCGAATTGGTTCATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989