Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   MPG24_RS02820 Genome accession   NZ_CP094110
Coordinates   594453..594737 (-) Length   94 a.a.
NCBI ID   WP_000736478.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe071     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 589453..599737
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG24_RS02795 (MPG24_02795) - 590064..591233 (-) 1170 WP_245104697.1 VirB8/TrbF family protein -
  MPG24_RS02800 (MPG24_02800) - 591226..591360 (-) 135 WP_000738749.1 hypothetical protein -
  MPG24_RS02805 (MPG24_02805) - 591357..593932 (-) 2576 Protein_538 VirB4 family type IV secretion/conjugal transfer ATPase -
  MPG24_RS02810 (MPG24_02810) - 593932..594168 (-) 237 WP_001183709.1 hypothetical protein -
  MPG24_RS02815 (MPG24_02815) comB3 594179..594442 (-) 264 WP_001177712.1 hypothetical protein Machinery gene
  MPG24_RS02820 (MPG24_02820) comB2 594453..594737 (-) 285 WP_000736478.1 TrbC/VirB2 family protein Machinery gene
  MPG24_RS02825 (MPG24_02825) - 594734..595213 (-) 480 WP_245104699.1 hypothetical protein -
  MPG24_RS02830 (MPG24_02830) - 595318..596106 (-) 789 WP_245104701.1 integrase -
  MPG24_RS02835 (MPG24_02835) - 596159..597292 (+) 1134 Protein_544 TonB-dependent receptor -
  MPG24_RS02840 (MPG24_02840) hofG 597543..599087 (+) 1545 WP_245104703.1 outer membrane beta-barrel protein HofG -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10683.00 Da        Isoelectric Point: 10.9123

>NTDB_id=666982 MPG24_RS02820 WP_000736478.1 594453..594737(-) (comB2) [Helicobacter pylori strain Hpfe071]
MKKLSHFRKLIAFLGFSPLLLQADMTTFFNSIEQQLTSPTAKGILMVIFLGLAIFIWKNLDRWKEILMTVLAIAIGAAIF
FKAPALANWFMSIF

Nucleotide


Download         Length: 285 bp        

>NTDB_id=666982 MPG24_RS02820 WP_000736478.1 594453..594737(-) (comB2) [Helicobacter pylori strain Hpfe071]
ATGAAAAAATTAAGTCATTTTAGAAAGCTCATCGCCTTTTTAGGTTTTTCACCACTTTTACTACAAGCGGATATGACTAC
CTTTTTTAATAGTATTGAACAACAACTCACTAGCCCTACCGCTAAGGGTATTTTGATGGTCATTTTTTTAGGGCTTGCTA
TTTTTATATGGAAAAATTTAGACAGATGGAAAGAAATCTTAATGACAGTCCTTGCTATTGCCATAGGCGCTGCAATCTTT
TTTAAAGCCCCAGCCTTAGCTAATTGGTTTATGAGTATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(4-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

57.143

96.809

0.553