Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   MPG41_RS07135 Genome accession   NZ_CP094109
Coordinates   1515113..1515394 (-) Length   93 a.a.
NCBI ID   WP_001279601.1    Uniprot ID   A0AB74KP27
Organism   Helicobacter pylori strain Hpfe072     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1510113..1520394
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG41_RS07115 (MPG41_07115) - 1510844..1512274 (-) 1431 WP_174245774.1 COG3014 family protein -
  MPG41_RS07125 (MPG41_07125) comB4 1512485..1514848 (-) 2364 WP_245067823.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  MPG41_RS07130 (MPG41_07130) comB3 1514850..1515113 (-) 264 WP_000584955.1 hypothetical protein Machinery gene
  MPG41_RS07135 (MPG41_07135) comB2 1515113..1515394 (-) 282 WP_001279601.1 TrbC/VirB2 family protein Machinery gene
  MPG41_RS07140 (MPG41_07140) - 1515539..1516366 (-) 828 WP_154423423.1 DUF5718 family protein -
  MPG41_RS07145 (MPG41_07145) - 1516458..1517510 (-) 1053 WP_245067825.1 MnmA/TRMU family protein -
  MPG41_RS07150 (MPG41_07150) dnaG 1517507..1519186 (-) 1680 WP_245067827.1 DNA primase -
  MPG41_RS07155 (MPG41_07155) groES 1519461..1519817 (+) 357 WP_000671947.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10583.82 Da        Isoelectric Point: 8.0163

>NTDB_id=666971 MPG41_RS07135 WP_001279601.1 1515113..1515394(-) (comB2) [Helicobacter pylori strain Hpfe072]
MSDHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=666971 MPG41_RS07135 WP_001279601.1 1515113..1515394(-) (comB2) [Helicobacter pylori strain Hpfe072]
ATGTCCGATCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAGGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTAGCGAATTGGTTTATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(8-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

97.849

100

0.978