Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   MPF92_RS07385 Genome accession   NZ_CP094106
Coordinates   1558492..1558773 (-) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori strain Hpfe075     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1553492..1563773
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPF92_RS07365 (MPF92_07365) - 1554202..1555542 (-) 1341 WP_180604040.1 hypothetical protein -
  MPF92_RS07375 (MPF92_07375) comB4 1555863..1558226 (-) 2364 WP_245023812.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  MPF92_RS07380 (MPF92_07380) comB3 1558229..1558492 (-) 264 WP_000584971.1 hypothetical protein Machinery gene
  MPF92_RS07385 (MPF92_07385) comB2 1558492..1558773 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  MPF92_RS07390 (MPF92_07390) - 1558918..1559745 (-) 828 WP_180649614.1 DUF5718 family protein -
  MPF92_RS07395 (MPF92_07395) - 1559836..1560888 (-) 1053 WP_021306479.1 MnmA/TRMU family protein -
  MPF92_RS07400 (MPF92_07400) dnaG 1560885..1562564 (-) 1680 WP_245023813.1 DNA primase -
  MPF92_RS07405 (MPF92_07405) groES 1562850..1563206 (+) 357 WP_000671953.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=666930 MPF92_RS07385 WP_001272686.1 1558492..1558773(-) (comB2) [Helicobacter pylori strain Hpfe075]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=666930 MPF92_RS07385 WP_001272686.1 1558492..1558773(-) (comB2) [Helicobacter pylori strain Hpfe075]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAGGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTAGCGAATTGGTTCATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989