Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   MPF92_RS06930 Genome accession   NZ_CP094106
Coordinates   1461782..1462066 (-) Length   94 a.a.
NCBI ID   WP_000736478.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe075     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1456782..1467066
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPF92_RS06905 (MPF92_06905) - 1457389..1458555 (-) 1167 WP_245023760.1 VirB8/TrbF family protein -
  MPF92_RS06910 (MPF92_06910) - 1458548..1458682 (-) 135 WP_000738749.1 hypothetical protein -
  MPF92_RS06915 (MPF92_06915) - 1458679..1461261 (-) 2583 WP_245023761.1 VirB4 family type IV secretion/conjugal transfer ATPase -
  MPF92_RS06920 (MPF92_06920) - 1461261..1461497 (-) 237 WP_001183709.1 hypothetical protein -
  MPF92_RS06925 (MPF92_06925) comB3 1461508..1461771 (-) 264 WP_001177712.1 hypothetical protein Machinery gene
  MPF92_RS06930 (MPF92_06930) comB2 1461782..1462066 (-) 285 WP_000736478.1 TrbC/VirB2 family protein Machinery gene
  MPF92_RS06935 (MPF92_06935) - 1462063..1462542 (-) 480 WP_195834060.1 hypothetical protein -
  MPF92_RS06940 (MPF92_06940) - 1462646..1463434 (-) 789 WP_245023762.1 integrase -
  MPF92_RS06945 (MPF92_06945) rpoD 1463620..1465647 (+) 2028 WP_245023763.1 RNA polymerase sigma factor RpoD -
  MPF92_RS06950 (MPF92_06950) - 1465668..1467032 (+) 1365 WP_245023764.1 SH3 domain-containing protein -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10683.00 Da        Isoelectric Point: 10.9123

>NTDB_id=666925 MPF92_RS06930 WP_000736478.1 1461782..1462066(-) (comB2) [Helicobacter pylori strain Hpfe075]
MKKLSHFRKLIAFLGFSPLLLQADMTTFFNSIEQQLTSPTAKGILMVIFLGLAIFIWKNLDRWKEILMTVLAIAIGAAIF
FKAPALANWFMSIF

Nucleotide


Download         Length: 285 bp        

>NTDB_id=666925 MPF92_RS06930 WP_000736478.1 1461782..1462066(-) (comB2) [Helicobacter pylori strain Hpfe075]
ATGAAAAAATTAAGTCATTTTAGAAAGCTCATCGCCTTTTTAGGTTTTTCACCACTTTTACTACAAGCGGATATGACTAC
CTTTTTTAATAGTATTGAACAACAACTCACTAGCCCCACCGCTAAGGGTATTTTGATGGTCATTTTTTTAGGGCTTGCTA
TTTTTATATGGAAAAATTTAGACAGATGGAAAGAAATCTTAATGACAGTCCTTGCTATTGCCATAGGCGCTGCAATCTTT
TTTAAAGCCCCAGCCTTAGCTAATTGGTTTATGAGTATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(4-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

57.143

96.809

0.553