Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   MPG65_RS07000 Genome accession   NZ_CP094105
Coordinates   1478368..1478649 (-) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori strain Hpfe076     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1473368..1483649
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG65_RS06980 (MPG65_06980) - 1474078..1475418 (-) 1341 WP_245072836.1 hypothetical protein -
  MPG65_RS06990 (MPG65_06990) comB4 1475740..1478103 (-) 2364 WP_245072038.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  MPG65_RS06995 (MPG65_06995) comB3 1478105..1478368 (-) 264 WP_245072039.1 competence protein ComB Machinery gene
  MPG65_RS07000 (MPG65_07000) comB2 1478368..1478649 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  MPG65_RS07005 (MPG65_07005) - 1478794..1479621 (-) 828 WP_245072040.1 DUF5718 family protein -
  MPG65_RS07010 (MPG65_07010) - 1479712..1480764 (-) 1053 WP_245072041.1 MnmA/TRMU family protein -
  MPG65_RS07015 (MPG65_07015) dnaG 1480761..1482440 (-) 1680 WP_245072042.1 DNA primase -
  MPG65_RS07020 (MPG65_07020) groES 1482716..1483072 (+) 357 WP_000671954.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=666908 MPG65_RS07000 WP_001272686.1 1478368..1478649(-) (comB2) [Helicobacter pylori strain Hpfe076]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=666908 MPG65_RS07000 WP_001272686.1 1478368..1478649(-) (comB2) [Helicobacter pylori strain Hpfe076]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAGGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTAGCGAATTGGTTCATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989