Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   MPF96_RS07275 Genome accession   NZ_CP094101
Coordinates   1524123..1524386 (-) Length   87 a.a.
NCBI ID   WP_000584971.1    Uniprot ID   A0A0L0QIL1
Organism   Helicobacter pylori strain Hpfe079     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1519123..1529386
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPF96_RS07260 (MPF96_07260) - 1520077..1521417 (-) 1341 WP_245048930.1 hypothetical protein -
  MPF96_RS07270 (MPF96_07270) comB4 1521757..1524120 (-) 2364 WP_245048932.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  MPF96_RS07275 (MPF96_07275) comB3 1524123..1524386 (-) 264 WP_000584971.1 hypothetical protein Machinery gene
  MPF96_RS07280 (MPF96_07280) comB2 1524386..1524667 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  MPF96_RS07285 (MPF96_07285) - 1524812..1525639 (-) 828 WP_245048934.1 DUF5718 family protein -
  MPF96_RS07290 (MPF96_07290) - 1525730..1526782 (-) 1053 WP_015428478.1 MnmA/TRMU family protein -
  MPF96_RS07295 (MPF96_07295) dnaG 1526779..1528458 (-) 1680 WP_245048936.1 DNA primase -
  MPF96_RS07300 (MPF96_07300) groES 1528733..1529089 (+) 357 WP_000671953.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10076.17 Da        Isoelectric Point: 9.5507

>NTDB_id=666867 MPF96_RS07275 WP_000584971.1 1524123..1524386(-) (comB3) [Helicobacter pylori strain Hpfe079]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFVPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIIARSKIKT
KTKCYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=666867 MPF96_RS07275 WP_000584971.1 1524123..1524386(-) (comB3) [Helicobacter pylori strain Hpfe079]
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGTGCCTTTTATTTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGTTGGAATTTTTTGATGAAGATATTGCAGATATTATTATTGCTAGAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0L0QIL1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

96.552

100

0.966