Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   OG782_RS06015 Genome accession   NZ_CP108800
Coordinates   1395110..1396501 (-) Length   463 a.a.
NCBI ID   WP_406448354.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00876     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1390110..1401501
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG782_RS05990 (OG782_05990) - 1390298..1390651 (-) 354 WP_406448351.1 DUF6167 family protein -
  OG782_RS05995 (OG782_05995) - 1390659..1391099 (-) 441 WP_406458873.1 DUF948 domain-containing protein -
  OG782_RS06000 (OG782_06000) - 1391329..1393569 (+) 2241 WP_406448352.1 ATP-binding protein -
  OG782_RS06005 (OG782_06005) rpsD 1393588..1394202 (-) 615 WP_136327444.1 30S ribosomal protein S4 -
  OG782_RS06010 (OG782_06010) - 1394391..1395092 (+) 702 WP_406448353.1 DUF2470 domain-containing protein -
  OG782_RS06015 (OG782_06015) rarA 1395110..1396501 (-) 1392 WP_406448354.1 replication-associated recombination protein A Machinery gene
  OG782_RS06020 (OG782_06020) - 1396595..1397230 (-) 636 WP_406448355.1 vitamin K epoxide reductase family protein -
  OG782_RS06025 (OG782_06025) hisS 1397656..1398918 (-) 1263 WP_406448356.1 histidine--tRNA ligase -
  OG782_RS06030 (OG782_06030) - 1398932..1399618 (-) 687 WP_385281197.1 MBL fold metallo-hydrolase -
  OG782_RS06035 (OG782_06035) - 1399766..1400560 (+) 795 WP_406448357.1 peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 49223.65 Da        Isoelectric Point: 6.1489

>NTDB_id=666864 OG782_RS06015 WP_406448354.1 1395110..1396501(-) (rarA) [Streptomyces sp. NBC_00876]
MEPDLFTAAAEDRQEKDPSSSPLAVRMRPRTLDEVVGQQHLLKPGSPLRRLVGEGSGGPAGPSSVILWGPPGIGKTTLAY
VVSKATNKRFVELSAITAGVKEVRAVIEGARRATGGYGKETVLFLDEIHRFSKAQQDSLLPAVENRWVTLIAATTENPYF
SIISPLLSRSLLLTLESLTDDDLRGLLHRALTDERGLGGAVTLNEDAQAHLLRIAGGDARRALTALEAAAGAAMSKQEEE
ITLLTLEETVDRAAVKYDRDGDQHYDVASALIKSIRGSDVDAALHYLARMIEAGEDPRFIARRLMISASEDIGLADPTAL
PTAVAAAQAVAMIGFPEAALTLGHATIALALAPKSNAATLAIFAAQEDVRKGLAGPVPAHLRDGHYKGAAKLGHAQGYVY
PHDVPGGIAAQQYAPDAVRDKRYYRPTRYGAEARYADVADRVRERLGRAGDDDGGAASAPDSP

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=666864 OG782_RS06015 WP_406448354.1 1395110..1396501(-) (rarA) [Streptomyces sp. NBC_00876]
GTGGAGCCCGACCTCTTTACCGCAGCTGCCGAAGACCGCCAGGAGAAGGACCCGTCCAGCAGCCCCCTCGCTGTCCGGAT
GCGTCCGCGTACCCTCGACGAGGTCGTGGGCCAGCAGCATCTGCTCAAGCCGGGCTCGCCGCTGCGCCGCCTCGTCGGCG
AAGGAAGCGGGGGACCGGCCGGCCCGTCGTCGGTGATCCTCTGGGGCCCGCCCGGCATCGGGAAGACGACCCTGGCGTAC
GTGGTCAGCAAGGCCACCAACAAGCGCTTCGTCGAGCTCTCCGCGATCACCGCAGGCGTCAAGGAAGTCCGGGCCGTGAT
CGAGGGGGCCCGCCGCGCCACCGGCGGCTACGGCAAGGAGACCGTCCTCTTCCTGGACGAGATCCACCGCTTCTCCAAGG
CGCAGCAGGACTCGCTGCTCCCGGCCGTGGAGAACCGCTGGGTGACGCTGATCGCCGCGACCACCGAGAATCCGTACTTC
TCGATCATCTCCCCGCTGCTCTCGCGTTCACTGCTGCTGACGCTGGAATCGCTGACCGACGACGATCTGCGCGGGCTGCT
CCACCGGGCCCTGACCGACGAGCGCGGACTCGGCGGAGCGGTGACGCTGAACGAGGACGCCCAGGCACATCTGCTGCGCA
TCGCGGGGGGCGACGCGCGACGCGCACTGACGGCCCTGGAGGCCGCGGCCGGTGCAGCGATGTCCAAACAGGAGGAGGAG
ATCACCCTCCTCACCCTGGAGGAGACCGTCGACCGGGCGGCCGTGAAGTACGACCGCGACGGCGACCAGCACTACGACGT
GGCGAGTGCCCTGATCAAGTCGATCCGCGGCTCCGACGTCGACGCGGCGCTGCACTATCTGGCCCGGATGATCGAGGCGG
GGGAGGACCCCCGGTTCATCGCCCGGCGGCTGATGATCTCGGCCAGCGAGGACATCGGCCTCGCGGATCCCACGGCGCTG
CCCACCGCGGTCGCGGCGGCCCAGGCCGTCGCGATGATCGGCTTCCCGGAGGCGGCGCTCACCCTGGGCCACGCCACGAT
CGCGCTGGCGCTCGCCCCGAAGTCCAACGCGGCGACACTGGCGATCTTCGCGGCCCAGGAGGACGTGCGGAAGGGGCTGG
CCGGCCCCGTCCCGGCCCATCTGCGCGACGGCCACTACAAGGGCGCGGCCAAACTGGGCCACGCCCAGGGCTACGTCTAT
CCGCACGACGTCCCGGGCGGCATCGCCGCTCAGCAGTACGCCCCGGACGCCGTCCGCGACAAGCGCTACTACCGGCCCAC
CCGCTACGGGGCGGAGGCGCGGTACGCGGATGTGGCGGACCGGGTCCGTGAGCGTCTGGGCCGTGCGGGCGACGACGACG
GCGGCGCCGCGAGCGCGCCCGACAGCCCGTAG

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(65-169)

AAA C-terminal domain (AAA_assoc_2)

(199-276)

MgsA AAA+ ATPase C terminal (MgsA_C)

(277-441)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

45.221

92.657

0.419