Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   MPF96_RS07130 Genome accession   NZ_CP094101
Coordinates   1488069..1489382 (-) Length   437 a.a.
NCBI ID   WP_245048900.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe079     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1483069..1494382
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPF96_RS07100 (MPF96_07100) nadC 1483532..1484353 (-) 822 WP_245048893.1 carboxylating nicotinate-nucleotide diphosphorylase -
  MPF96_RS07105 (MPF96_07105) nadA 1484353..1485363 (-) 1011 WP_245048896.1 quinolinate synthase NadA -
  MPF96_RS07110 (MPF96_07110) - 1485353..1486156 (-) 804 WP_212879442.1 phosphatidylserine decarboxylase -
  MPF96_RS07115 (MPF96_07115) - 1486153..1486656 (-) 504 WP_000953102.1 hypothetical protein -
  MPF96_RS07120 (MPF96_07120) - 1486669..1487163 (-) 495 WP_162979677.1 hypothetical protein -
  MPF96_RS07125 (MPF96_07125) mqnP 1487156..1488040 (-) 885 WP_245048898.1 menaquinone biosynthesis prenyltransferase MqnP -
  MPF96_RS07130 (MPF96_07130) comEC/comE3 1488069..1489382 (-) 1314 WP_245048900.1 ComEC/Rec2 family competence protein Machinery gene
  MPF96_RS07135 (MPF96_07135) - 1489379..1490845 (-) 1467 WP_245048902.1 replicative DNA helicase -
  MPF96_RS07140 (MPF96_07140) - 1490855..1492249 (-) 1395 WP_245048904.1 NAD(P)H-hydrate dehydratase -
  MPF96_RS07145 (MPF96_07145) crdS 1492252..1493454 (-) 1203 WP_245049907.1 copper-sensing histidine kinase CrdS -
  MPF96_RS07150 (MPF96_07150) crdR 1493420..1494061 (-) 642 WP_154417806.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50039.92 Da        Isoelectric Point: 9.8572

>NTDB_id=666864 MPF96_RS07130 WP_245048900.1 1488069..1489382(-) (comEC/comE3) [Helicobacter pylori strain Hpfe079]
MKDKTFQGAFELLATPKEYLLCGVILSLLLALNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYATIKEPLKNLQYRHAQFFGKIKSCSFLESLRSCFFQTYSFSLTRKQDFKSHWRHFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLVRSFQIISLS
ALVFLNMLIVVHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDSILNMPLTIPTISVSSPLWLLGAHLFLT
ILSARFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=666864 MPF96_RS07130 WP_245048900.1 1488069..1489382(-) (comEC/comE3) [Helicobacter pylori strain Hpfe079]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTGCAACCCCCAAAGAATACTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGCACTTAATCTTTATTTAGAATATTTGAATTACCAAAAGCTTGATTTTTCAAAACCCACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTATGCCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCACGCGCAATTTTTTGGCAAAATCAAATCTTGCTC
GTTTTTGGAGTCCTTAAGATCATGCTTTTTTCAAACCTATTCTTTTTCTTTAACACGAAAACAAGATTTCAAATCGCATT
GGCGCCATTTCATTGATAGCGCTCATTCAAGCGCTTTAGTGGGGAATTTGTATCGAGCGTTGTTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGATAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGGTTCCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTTCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCTATAGCATTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGGTGCGATCTTTTCAGATCATAAGCTTAAGC
GCGCTAGTGTTTTTGAACATGCTTATCGTTGTGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTCTTGCATGCTGTGGGTTTGGGGTCTTTGTTGGATTCCA
TTTTAAACATGCCTTTAACGATCCCTACAATTTCGGTTTCTTCGCCTTTATGGCTTTTAGGGGCACATTTATTTTTAACG
ATTTTGAGCGCGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTGAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTTAATTGTAGGTTAG

Domains

Predicted by InterProScan.

Competence protein (Competence)

(159-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.966

100

0.95