Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   MPG69_RS07190 Genome accession   NZ_CP094096
Coordinates   1517383..1517646 (-) Length   87 a.a.
NCBI ID   WP_000584953.1    Uniprot ID   A0AAV3IGW5
Organism   Helicobacter pylori strain Hpfe082     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1512383..1522646
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG69_RS07175 (MPG69_07175) - 1513356..1514696 (-) 1341 WP_245055749.1 hypothetical protein -
  MPG69_RS07185 (MPG69_07185) comB4 1515017..1517380 (-) 2364 WP_245055751.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  MPG69_RS07190 (MPG69_07190) comB3 1517383..1517646 (-) 264 WP_000584953.1 hypothetical protein Machinery gene
  MPG69_RS07195 (MPG69_07195) comB2 1517646..1517927 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  MPG69_RS07200 (MPG69_07200) - 1518072..1518899 (-) 828 WP_245055760.1 DUF5718 family protein -
  MPG69_RS07205 (MPG69_07205) - 1518991..1520043 (-) 1053 WP_245055762.1 MnmA/TRMU family protein -
  MPG69_RS07210 (MPG69_07210) dnaG 1520040..1521719 (-) 1680 WP_245055764.1 DNA primase -
  MPG69_RS07215 (MPG69_07215) groES 1522005..1522361 (+) 357 WP_000671953.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10020.11 Da        Isoelectric Point: 9.5290

>NTDB_id=666805 MPG69_RS07190 WP_000584953.1 1517383..1517646(-) (comB3) [Helicobacter pylori strain Hpfe082]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIIAKSKIKT
KTKCYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=666805 MPG69_RS07190 WP_000584953.1 1517383..1517646(-) (comB3) [Helicobacter pylori strain Hpfe082]
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGCGCCTTTTATTTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGTTGGAATTTTTTGATGAAGATATTGCAGATATTATTATTGCTAAAAGCAAAATAAAGACT
AAAACCAAATGTTATAGGGCGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

98.851

100

0.989