Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   MPG47_RS07070 Genome accession   NZ_CP094095
Coordinates   1481905..1482186 (-) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori strain Hpfe083     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1476905..1487186
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG47_RS07050 (MPG47_07050) - 1477616..1479046 (-) 1431 WP_195182530.1 COG3014 family protein -
  MPG47_RS07060 (MPG47_07060) comB4 1479277..1481640 (-) 2364 WP_245016110.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  MPG47_RS07065 (MPG47_07065) comB3 1481642..1481905 (-) 264 WP_245016111.1 competence protein ComB Machinery gene
  MPG47_RS07070 (MPG47_07070) comB2 1481905..1482186 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  MPG47_RS07075 (MPG47_07075) - 1482330..1483157 (-) 828 WP_245016112.1 DUF5718 family protein -
  MPG47_RS07080 (MPG47_07080) - 1483249..1484301 (-) 1053 WP_156608000.1 MnmA/TRMU family protein -
  MPG47_RS07085 (MPG47_07085) dnaG 1484298..1485977 (-) 1680 WP_245016113.1 DNA primase -
  MPG47_RS07090 (MPG47_07090) groES 1486254..1486610 (+) 357 WP_000671952.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=666786 MPG47_RS07070 WP_001272686.1 1481905..1482186(-) (comB2) [Helicobacter pylori strain Hpfe083]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=666786 MPG47_RS07070 WP_001272686.1 1481905..1482186(-) (comB2) [Helicobacter pylori strain Hpfe083]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGATTAGAGGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTATTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTAGCGAATTGGTTTATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989