Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   MPF97_RS07015 Genome accession   NZ_CP094093
Coordinates   1474821..1475102 (-) Length   93 a.a.
NCBI ID   WP_001277275.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe085     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1469821..1480102
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPF97_RS06995 (MPF97_06995) - 1470531..1471871 (-) 1341 WP_245102355.1 hypothetical protein -
  MPF97_RS07005 (MPF97_07005) comB4 1472192..1474555 (-) 2364 WP_245102356.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  MPF97_RS07010 (MPF97_07010) comB3 1474558..1474821 (-) 264 WP_000584953.1 hypothetical protein Machinery gene
  MPF97_RS07015 (MPF97_07015) comB2 1474821..1475102 (-) 282 WP_001277275.1 TrbC/VirB2 family protein Machinery gene
  MPF97_RS07020 (MPF97_07020) - 1475247..1476074 (-) 828 WP_245102359.1 DUF5718 family protein -
  MPF97_RS07025 (MPF97_07025) - 1476165..1477217 (-) 1053 WP_140447064.1 MnmA/TRMU family protein -
  MPF97_RS07030 (MPF97_07030) dnaG 1477214..1478893 (-) 1680 WP_245102361.1 DNA primase -
  MPF97_RS07035 (MPF97_07035) groES 1479169..1479525 (+) 357 WP_024114193.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10565.85 Da        Isoelectric Point: 9.0456

>NTDB_id=666745 MPF97_RS07015 WP_001277275.1 1474821..1475102(-) (comB2) [Helicobacter pylori strain Hpfe085]
MSAYFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=666745 MPF97_RS07015 WP_001277275.1 1474821..1475102(-) (comB2) [Helicobacter pylori strain Hpfe085]
ATGTCCGCTTATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGATTAGAAGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGAATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTAGCGAATTGGTTTATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(7-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

97.849

100

0.978