Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   MPG82_RS07155 Genome accession   NZ_CP094092
Coordinates   1491723..1492004 (-) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori strain Hpfe086     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1486723..1497004
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG82_RS07135 (MPG82_07135) - 1487434..1488774 (-) 1341 WP_245083670.1 hypothetical protein -
  MPG82_RS07145 (MPG82_07145) comB4 1489095..1491458 (-) 2364 WP_245082306.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  MPG82_RS07150 (MPG82_07150) comB3 1491460..1491723 (-) 264 WP_000584971.1 hypothetical protein Machinery gene
  MPG82_RS07155 (MPG82_07155) comB2 1491723..1492004 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  MPG82_RS07160 (MPG82_07160) - 1492149..1492976 (-) 828 WP_180414290.1 DUF5718 family protein -
  MPG82_RS07165 (MPG82_07165) - 1493067..1494119 (-) 1053 WP_021301516.1 MnmA/TRMU family protein -
  MPG82_RS07170 (MPG82_07170) dnaG 1494116..1495795 (-) 1680 WP_245082309.1 DNA primase -
  MPG82_RS07175 (MPG82_07175) groES 1496070..1496426 (+) 357 WP_000671953.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=666725 MPG82_RS07155 WP_001272686.1 1491723..1492004(-) (comB2) [Helicobacter pylori strain Hpfe086]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=666725 MPG82_RS07155 WP_001272686.1 1491723..1492004(-) (comB2) [Helicobacter pylori strain Hpfe086]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGATTAGAAGGGTT
TTTTAATGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTTTTT
AAAGCCCCGAGTTTAGCGAATTGGTTTATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989